Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.2e-244 849.7 557 100.0
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.2e-192 675.6 558 83.7
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.2e-192 675.6 558 83.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.6e-188 663.3 544 84.7
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.1e-184 650.6 553 73.8
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 7.2e-160 568.2 581 66.1
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 7.9e-151 538.1 550 65.6
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 8.8e-150 534.6 563 63.9
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 7.4e-149 531.6 587 62.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.7e-148 529.3 570 64.2
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 3.5e-146 522.7 562 64.1
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 5.9e-146 521.9 561 63.8
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 8.5e-145 518.1 552 65.4
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.1e-144 517.7 542 67.5
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.9e-144 516.9 569 62.7
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.9e-144 516.9 555 64.7
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.6e-143 513.8 549 64.8
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.6e-143 512.7 587 64.7
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 3.6e-143 512.7 539 63.6
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.7e-143 512.3 593 62.7
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 7.5e-141 505.0 579 63.4
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.3e-140 504.2 555 61.8
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-140 504.2 560 67.0
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.8e-140 503.1 565 62.3
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.4e-139 500.7 557 55.5
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 2.4e-139 500.0 562 62.6
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 7.0e-139 498.4 553 64.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 9.1e-139 498.0 587 64.1
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.2e-138 497.7 559 63.5
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 2.7e-138 496.5 551 63.3
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 3.8e-137 492.7 545 67.9
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.2e-135 487.6 560 64.3
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 1.2e-135 487.6 572 63.8
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 6.1e-135 485.3 551 62.8
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 6.1e-135 485.3 553 62.6
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-134 484.6 557 63.0
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-134 484.2 555 62.3
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 4.0e-134 482.6 553 62.4
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 4.0e-134 482.6 542 60.3
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 4.0e-134 482.6 550 65.1
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 5.2e-134 482.3 546 61.4
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-133 481.1 559 59.6
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.5e-133 480.7 544 63.4
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.5e-133 480.7 546 62.1
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.0e-133 480.3 552 60.7
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 2.0e-133 480.3 556 62.8
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 4.4e-133 479.2 545 63.1
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 5.7e-133 478.8 541 59.3
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 7.5e-133 478.4 575 62.8
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.8e-132 476.5 544 60.1
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 4.8e-132 475.7 552 62.0
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.3e-132 474.9 557 63.6
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-131 474.2 541 64.3
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 2.4e-131 473.4 572 61.9
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 7.0e-131 471.9 560 62.1
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.6e-130 470.7 555 65.9
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 7.7e-130 468.4 590 56.8
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.3e-129 467.6 553 52.4
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 8.5e-129 464.9 559 61.2
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.1e-128 464.5 550 62.7
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 2.5e-128 463.4 559 62.8
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.5e-128 463.4 554 62.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 3.2e-128 463.0 550 60.5
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.1e-127 460.3 549 62.7
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 6.1e-127 458.8 576 59.0
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 8.0e-127 458.4 551 62.4
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.0e-126 458.0 563 52.8
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.4e-126 457.6 552 61.4
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.4e-126 457.6 552 63.4
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 3.0e-126 456.4 576 60.1
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.5e-125 454.1 546 62.3
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 2.6e-125 453.4 576 57.5
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 3.4e-125 453.0 560 61.6
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 9.8e-125 451.4 561 57.8
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 9.8e-125 451.4 555 62.0
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 3.7e-124 449.5 544 57.4
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 3.7e-124 449.5 532 54.3
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 4.1e-123 446.0 566 59.2
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 3.5e-122 443.0 626 54.5
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 4.5e-122 442.6 546 59.5
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.7e-121 440.7 599 54.8
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.1e-120 438.0 549 57.7
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.1e-120 438.0 622 59.2
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.5e-120 437.6 542 57.0
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.3e-120 436.4 542 57.9
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 1.6e-119 434.1 545 61.7
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.6e-119 433.0 543 57.5
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 4.7e-119 432.6 570 56.7
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.4e-118 431.0 581 54.4
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 3.0e-118 429.9 541 59.7
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.0e-118 429.9 540 58.7
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.2e-117 427.9 542 55.9
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 2.6e-117 426.8 564 60.5
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 6.4e-116 422.2 565 51.3
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 6.4e-116 422.2 540 55.2
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 1.1e-115 421.4 573 52.2
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 2.4e-115 420.2 546 50.2
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.0e-113 413.3 580 58.1
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 5.6e-112 409.1 520 49.6
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.9e-107 394.0 485 58.8
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.4e-107 393.7 541 46.2
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.7e-105 387.5 579 56.0
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 2.5e-104 383.6 547 52.3
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 6.2e-103 379.0 564 47.0
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 6.4e-100 369.0 547 56.3
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.9e-99 367.5 548 56.0
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.9e-96 357.5 536 53.0
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.2e-92 344.0 372 63.4
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 8.9e-86 322.0 597 52.1
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.4e-83 313.9 367 61.0
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 2.8e-79 300.4 535 47.1
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.6e-79 300.1 525 39.8
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.9e-76 290.4 527 44.0
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 5.4e-75 286.2 557 49.0
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.9e-73 280.0 500 47.2
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.3e-71 275.0 383 53.5
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.1e-71 274.2 492 40.2
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 4.6e-66 256.5 564 35.3
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 6.5e-60 236.1 164 76.8
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 4.2e-59 233.4 211 62.1
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.7e-58 230.7 258 54.3
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.1e-54 218.8 147 77.6
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 1.4e-54 218.4 358 50.3
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.9e-51 208.0 241 51.0
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.6e-50 204.9 125 87.2
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 5.7e-48 196.4 274 49.6
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 5.3e-46 189.9 241 46.5
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.4e-45 187.2 376 49.7
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 2.5e-43 181.0 191 56.0
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 2.5e-43 181.0 191 56.0
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 1.2e-34 152.1 237 39.7
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.6e-29 135.2 103 70.9
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 3.0e-25 120.9 181 56.9
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.2e-23 114.8 146 52.1
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 2.4e-22 111.3 151 50.3
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 2.1e-18 98.2 270 32.2
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.4e-16 90.5 62 72.6
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.8e-14 85.1 96 52.1
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.6e-13 82.0 73 64.4
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 2.0e-13 81.6 77 58.4
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 4.5e-13 80.5 62 67.7
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 1.0e-12 79.3 61 67.2
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 6.5e-12 76.6 79 53.2
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 3.2e-11 74.3 57 75.4
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.2e-10 72.4 69 58.0
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 4.7e-10 70.5 101 46.5
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.8e-06 58.5 37 70.3
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 3.1e-06 57.8 100 40.0
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.1e-06 57.4 76 52.6
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 7.0e-06 56.6 34 85.3


User provided reference genes

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