Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.4e-84 316.2 159 100.0
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 3.4e-38 162.2 100 81.0
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 4.4e-38 161.8 101 80.2
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 9.8e-38 160.6 142 62.0
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-37 160.2 100 80.0
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 2.2e-37 159.5 142 62.0
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 2.2e-37 159.5 100 80.0
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.2e-37 159.5 142 62.0
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 2.9e-37 159.1 100 80.0
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.7e-37 158.7 142 61.3
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 3.7e-37 158.7 100 79.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.4e-37 157.9 139 61.9
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.4e-37 157.9 99 78.8
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 8.3e-37 157.5 100 79.0
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.1e-36 157.1 142 61.3
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.4e-36 156.8 97 79.4
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.4e-36 156.8 100 79.0
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.4e-36 156.8 100 79.0
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-36 156.4 139 61.2
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-36 156.4 139 61.2
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-36 156.4 139 61.2
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.9e-36 156.4 99 77.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.9e-36 156.4 100 78.0
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.9e-36 156.4 100 79.0
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 2.4e-36 156.0 97 80.4
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.2e-36 155.6 138 60.1
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 3.2e-36 155.6 100 78.0
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.2e-36 155.6 141 58.9
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 3.2e-36 155.6 141 58.9
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.1e-36 155.2 100 78.0
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 4.1e-36 155.2 100 78.0
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 4.1e-36 155.2 96 80.2
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.1e-36 155.2 96 80.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 7.1e-36 154.5 139 59.0
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 7.1e-36 154.5 100 76.0
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 7.1e-36 154.5 142 59.2
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 9.2e-36 154.1 99 76.8
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 9.2e-36 154.1 142 59.2
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 9.2e-36 154.1 98 77.6
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.2e-35 153.7 97 79.4
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.2e-35 153.7 141 58.9
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.2e-35 153.7 139 59.7
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.2e-35 153.7 97 79.4
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.6e-35 153.3 142 59.2
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.6e-35 153.3 142 59.2
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.6e-35 153.3 141 58.2
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.1e-35 152.9 139 59.7
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.7e-35 152.5 100 77.0
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 2.7e-35 152.5 100 77.0
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 2.7e-35 152.5 139 59.0
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.7e-35 152.5 100 76.0
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.5e-35 152.1 141 59.6
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 3.5e-35 152.1 100 76.0
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 3.5e-35 152.1 100 76.0
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 3.5e-35 152.1 100 76.0
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 3.5e-35 152.1 137 59.9
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 3.5e-35 152.1 139 59.0
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.5e-35 152.1 97 78.4
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.5e-35 152.1 101 78.2
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 3.5e-35 152.1 139 59.0
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 3.5e-35 152.1 97 78.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.5e-35 152.1 97 78.4
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 3.5e-35 152.1 97 78.4
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 3.5e-35 152.1 101 78.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 4.6e-35 151.8 142 59.2
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 4.6e-35 151.8 142 59.2
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 4.6e-35 151.8 142 59.2
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 4.6e-35 151.8 96 79.2
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 4.6e-35 151.8 100 76.0
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.6e-35 151.8 100 76.0
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.6e-35 151.8 100 76.0
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.6e-35 151.8 100 76.0
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.6e-35 151.8 100 76.0
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 6.0e-35 151.4 97 77.3
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 6.0e-35 151.4 97 77.3
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 6.0e-35 151.4 97 77.3
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 6.0e-35 151.4 139 58.3
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 6.0e-35 151.4 97 78.4
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 6.0e-35 151.4 101 75.2
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 6.0e-35 151.4 102 74.5
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 7.8e-35 151.0 142 57.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 7.8e-35 151.0 100 76.0
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 7.8e-35 151.0 100 76.0
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 7.8e-35 151.0 100 75.0
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.0e-34 150.6 99 76.8
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.0e-34 150.6 99 76.8
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.0e-34 150.6 106 72.6
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.0e-34 150.6 97 76.3
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.3e-34 150.2 100 75.0
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 1.3e-34 150.2 96 77.1
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 1.7e-34 149.8 100 76.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 1.7e-34 149.8 100 76.0
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.7e-34 149.8 100 74.0
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.7e-34 149.8 97 77.3
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.7e-34 149.8 97 77.3
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.7e-34 149.8 97 77.3
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-34 149.8 101 77.2
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.7e-34 149.8 101 77.2
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.7e-34 149.8 107 70.1
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 1.7e-34 149.8 97 77.3
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.7e-34 149.8 97 77.3
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.3e-34 149.4 107 72.0
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.3e-34 149.4 100 75.0
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.3e-34 149.4 143 58.0
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.3e-34 149.4 97 77.3
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 2.3e-34 149.4 136 59.6
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.3e-34 149.4 139 58.3
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 3.0e-34 149.1 99 74.7
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.0e-34 149.1 101 75.2
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 3.0e-34 149.1 100 72.0
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.9e-34 148.7 97 76.3
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.9e-34 148.7 97 76.3
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 3.9e-34 148.7 97 76.3
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.9e-34 148.7 106 72.6
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 5.1e-34 148.3 141 56.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 5.1e-34 148.3 97 76.3
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 5.1e-34 148.3 93 76.3
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.1e-34 148.3 93 76.3
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 5.1e-34 148.3 97 76.3
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 5.1e-34 148.3 94 77.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 6.6e-34 147.9 104 73.1
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 6.6e-34 147.9 99 74.7
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 6.6e-34 147.9 99 74.7
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 6.6e-34 147.9 99 74.7
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 8.6e-34 147.5 100 73.0
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 8.6e-34 147.5 104 73.1
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 8.6e-34 147.5 94 78.7
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 8.6e-34 147.5 99 73.7
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 8.6e-34 147.5 99 73.7
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 8.6e-34 147.5 100 76.0
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.1e-33 147.1 106 70.8
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.1e-33 147.1 97 74.2
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.5e-33 146.7 100 71.0
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.9e-33 146.4 98 76.5
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.5e-33 146.0 93 76.3
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 4.3e-33 145.2 100 74.0
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 4.3e-33 145.2 106 69.8
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.6e-33 144.8 97 74.2
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 7.3e-33 144.4 94 76.6
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.2e-32 143.7 139 58.3
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.6e-32 142.1 123 59.3
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 8.1e-32 141.0 100 72.0
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.4e-31 140.2 94 70.2
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.3e-31 139.4 104 69.2
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 3.1e-31 139.0 99 71.7
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 3.1e-31 139.0 136 55.9
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.5e-30 136.7 123 57.7
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-29 133.7 97 71.1
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-29 133.7 123 57.7
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 4.9e-29 131.7 87 71.3
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 8.4e-29 131.0 92 73.9
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 9.2e-28 127.5 105 67.6
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.9e-26 122.1 86 74.4
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 9.6e-25 117.5 75 76.0
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.6e-24 116.7 78 71.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 4.0e-23 112.1 60 88.3
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.5e-22 110.2 99 58.6
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.9e-21 105.1 69 75.4
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.2e-20 102.1 97 55.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 9.6e-17 90.9 100 45.0
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.3e-15 85.1 61 68.9
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 2.2e-13 79.7 93 40.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 3.4e-06 55.8 46 63.0


User provided reference genes

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