Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 3.5e-150 536.2 406 100.0
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 7.6e-129 465.3 406 91.4
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 2.9e-120 436.8 403 87.6
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 1.1e-119 434.9 406 87.2
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 3.2e-119 433.3 405 87.2
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 1.2e-118 431.4 405 86.9
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 2.2e-91 340.9 409 75.3
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 2.8e-91 340.5 421 74.6
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 8.2e-91 339.0 388 78.1
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 2.0e-89 334.3 395 76.7
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 5.9e-89 332.8 400 77.2
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 2.2e-88 330.9 425 73.9
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 6.5e-88 329.3 407 76.2
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 6.5e-88 329.3 396 76.3
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 8.5e-88 328.9 419 73.0
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 1.1e-87 328.6 413 74.3
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 3.2e-87 327.0 419 72.8
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 4.2e-87 326.6 400 74.8
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 7.2e-87 325.9 414 73.9
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 9.4e-87 325.5 425 72.9
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 9.4e-87 325.5 411 74.7
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 4.7e-86 323.2 408 73.5
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 6.1e-86 322.8 413 74.3
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 8.0e-86 322.4 404 75.5
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 8.0e-86 322.4 408 73.5
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 8.0e-86 322.4 404 74.3
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 3.0e-85 320.5 394 75.6
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 4.0e-85 320.1 399 76.2
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 4.0e-85 320.1 410 72.7
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 4.0e-85 320.1 401 53.9
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 1.5e-84 318.2 394 74.1
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 1.5e-84 318.2 400 75.2
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 7.5e-84 315.8 394 75.4
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 7.5e-84 315.8 399 74.2
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 1.3e-83 315.1 408 63.0
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 1.1e-82 312.0 412 72.6
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 2.4e-82 310.8 420 72.4
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 2.4e-82 310.8 412 72.6
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 2.4e-82 310.8 412 72.6
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 7.0e-82 309.3 415 72.0
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 9.1e-82 308.9 409 72.1
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.6e-81 308.1 409 71.9
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 1.3e-80 305.1 406 71.2
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 1.3e-80 305.1 399 73.2
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 2.9e-80 303.9 411 72.5
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 1.5e-79 301.6 390 72.3
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 7.2e-79 299.3 404 73.3
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 3.6e-78 297.0 414 70.3
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 6.1e-78 296.2 416 70.0
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 5.2e-77 293.1 405 72.8
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 1.5e-76 291.6 411 69.6
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 3.4e-76 290.4 391 70.8
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 9.8e-76 288.9 403 72.5
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 9.8e-76 288.9 399 70.4
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 9.8e-76 288.9 404 69.3
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 3.7e-75 287.0 397 70.0
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 4.9e-75 286.6 400 70.0
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 8.3e-75 285.8 395 72.7
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 1.4e-74 285.0 397 69.8
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 1.8e-74 284.6 403 72.2
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 2.4e-74 284.3 412 70.4
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 2.4e-74 284.3 413 71.7
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 4.1e-74 283.5 399 70.4
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 5.4e-74 283.1 406 70.0
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 5.4e-74 283.1 398 70.4
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 7.0e-74 282.7 412 70.9
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 7.0e-74 282.7 408 68.4
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 3.5e-73 280.4 414 68.4
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 5.9e-73 279.6 405 68.9
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.0e-72 278.9 399 68.7
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 1.7e-72 278.1 412 69.9
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 2.3e-72 277.7 390 71.0
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 6.6e-72 276.2 414 66.2
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 6.6e-72 276.2 396 69.4
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 6.6e-72 276.2 413 66.3
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 6.6e-72 276.2 413 66.3
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 1.2e-70 271.9 420 66.4
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 1.1e-66 258.8 407 66.6
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.0e-65 254.6 230 58.3
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 4.3e-63 246.9 490 49.2
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 7.3e-63 246.1 412 62.9
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 9.5e-63 245.7 389 66.3
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 1.2e-62 245.4 418 64.4
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 1.5e-60 238.4 409 48.7
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 2.0e-60 238.0 435 59.1
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 3.2e-58 230.7 215 56.3
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 5.0e-56 223.4 392 64.5
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 4.0e-53 213.8 184 59.8
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 9.8e-52 209.1 395 62.3
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 4.1e-42 177.2 395 61.3
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 2.4e-34 151.4 228 44.3
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 5.6e-31 140.2 260 78.5
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 2.8e-30 137.9 131 51.9
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 3.7e-22 110.9 61 83.6
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 4.8e-22 110.5 61 78.7
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 8.1e-22 109.8 392 54.6
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.8e-21 108.6 61 82.0
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 2.4e-21 108.2 395 54.7
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 4.0e-21 107.5 61 77.0
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 6.9e-21 106.7 61 78.7
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 1.5e-20 105.5 61 75.4
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.5e-20 105.5 61 75.4
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 2.9e-19 101.3 61 77.0
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 1.8e-16 92.0 61 68.9
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 6.3e-06 57.0 27 81.5


User provided reference genes

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