Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 3.3e-225 784.6 382 100.0
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 2.1e-142 509.6 371 68.7
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.7e-131 472.2 382 63.6
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 5.3e-130 468.4 382 63.4
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 5.3e-122 441.8 379 59.4
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 4.4e-116 422.2 378 57.9
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.7e-109 398.3 364 55.8
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.7e-105 384.8 317 63.7
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.8e-104 382.5 382 53.7
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.7e-102 376.3 382 53.7
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.4e-100 369.4 364 52.2
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 9.8e-100 367.9 364 52.2
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.8e-98 363.6 379 49.3
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.2e-94 350.9 379 50.1
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.3e-91 340.9 379 47.2
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 7.0e-90 335.1 332 51.5
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.0e-88 328.9 370 46.5
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 8.6e-88 328.2 375 45.1
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 2.5e-87 326.6 347 50.7
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 3.3e-87 326.2 370 48.6
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 4.2e-87 325.9 376 47.9
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.2e-86 324.3 376 46.3
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 2.8e-86 323.2 377 48.5
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 3.0e-85 319.7 373 46.9
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.2e-84 317.8 371 45.6
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 1.2e-84 317.8 376 44.9
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.5e-84 317.4 369 46.3
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 3.4e-84 316.2 365 48.2
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 3.4e-84 316.2 363 47.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 4.4e-84 315.8 363 47.9
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 7.5e-84 315.1 356 49.4
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 1.7e-83 313.9 369 47.7
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 4.9e-83 312.4 369 47.2
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.1e-82 311.2 369 47.2
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.4e-82 310.8 367 46.0
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.4e-82 310.8 367 47.4
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.8e-82 310.5 374 46.0
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 2.4e-82 310.1 374 45.7
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 3.2e-82 309.7 366 46.7
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 7.0e-82 308.5 357 46.5
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.2e-81 307.8 362 45.6
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.2e-81 307.8 365 47.4
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 2.0e-81 307.0 371 46.1
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 2.7e-81 306.6 374 45.5
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 1.0e-80 304.7 357 46.2
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.9e-80 303.1 383 44.6
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 3.9e-80 302.8 372 46.2
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.1e-79 301.2 263 57.8
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.9e-79 300.4 367 44.7
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 4.3e-79 299.3 373 45.6
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 5.6e-79 298.9 362 45.9
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 7.3e-79 298.5 373 46.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.2e-78 297.7 383 43.1
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.0e-77 294.7 368 44.3
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.8e-77 293.9 373 43.7
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.8e-77 293.9 387 43.2
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.1e-77 293.1 372 45.2
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 4.0e-77 292.7 355 44.2
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 4.0e-77 292.7 386 43.0
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 6.8e-77 292.0 336 45.2
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.6e-76 290.0 335 47.2
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 5.8e-76 288.9 372 41.9
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 5.8e-76 288.9 382 44.0
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.7e-75 287.3 379 43.0
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 2.2e-75 287.0 368 45.1
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.2e-75 287.0 376 44.7
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.9e-75 286.6 362 44.5
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 6.4e-75 285.4 373 41.8
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 8.3e-75 285.0 381 41.2
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 8.3e-75 285.0 376 41.8
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.4e-74 284.3 369 44.7
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.9e-74 283.9 381 41.2
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 2.4e-74 283.5 360 44.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 2.4e-74 283.5 367 43.9
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 2.4e-74 283.5 361 42.9
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 5.4e-74 282.3 373 45.3
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 1.6e-73 280.8 374 42.0
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 2.0e-73 280.4 368 45.7
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 2.7e-73 280.0 364 42.6
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 3.5e-73 279.6 383 40.5
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.5e-73 279.6 374 40.9
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 3.5e-73 279.6 371 43.7
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 6.0e-73 278.9 373 42.1
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 6.0e-73 278.9 376 43.1
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 1.7e-72 277.3 371 43.4
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 8.6e-72 275.0 363 43.3
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.3e-71 273.1 324 45.7
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 4.3e-71 272.7 370 41.6
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 2.1e-70 270.4 368 42.4
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 3.6e-70 269.6 362 42.0
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 6.2e-70 268.9 380 41.8
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.1e-69 268.1 370 43.0
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.4e-69 267.7 378 39.7
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.1e-69 266.5 357 38.9
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 3.1e-69 266.5 371 39.1
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 3.1e-69 266.5 363 43.3
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 1.2e-68 264.6 362 42.8
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-68 264.6 372 39.5
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 2.0e-68 263.8 377 37.9
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 4.4e-68 262.7 384 38.8
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 4.4e-68 262.7 384 38.8
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.3e-67 261.2 361 42.9
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.9e-67 260.0 367 40.6
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.9e-67 260.0 353 39.1
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 2.4e-66 256.9 379 38.3
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 4.1e-66 256.1 384 38.5
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 5.4e-66 255.8 367 39.0
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 2.7e-65 253.4 370 37.8
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 6.0e-65 252.3 382 37.2
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.3e-64 251.1 223 58.3
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 3.9e-64 249.6 362 37.8
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 2.1e-62 243.8 372 39.2
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 2.3e-61 240.4 366 38.8
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 5.2e-61 239.2 361 39.6
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.5e-60 237.7 392 38.8
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.4e-58 231.1 257 47.9
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.2e-58 229.9 369 36.6
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 9.2e-58 228.4 368 35.6
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.1e-57 227.3 372 39.2
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 6.0e-57 225.7 192 58.3
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 2.5e-55 220.3 324 41.0
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 5.6e-55 219.2 369 37.7
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 2.8e-54 216.9 266 42.1
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 2.0e-52 210.7 325 34.2
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 4.4e-52 209.5 208 55.3
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 2.9e-51 206.8 283 42.8
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.1e-50 204.9 303 37.6
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.7e-49 200.3 267 41.6
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.3e-43 181.4 364 31.0
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 6.2e-38 162.5 223 37.7
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.2e-34 150.2 233 37.3
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 1.9e-31 141.0 216 38.9
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.4e-29 134.8 181 40.9
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 3.8e-27 126.7 130 46.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.5e-23 114.8 138 44.2
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.3e-23 113.6 389 27.2
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.8e-22 110.5 365 26.3
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 6.3e-22 109.4 371 26.1
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.8e-21 107.8 387 27.4
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 2.4e-21 107.5 348 25.9
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 6.9e-21 105.9 186 37.6
CAN.G771.60 Capsicum annuum HOM05D007853 ORTHO05D009873 9.0e-21 105.5 366 27.0
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 1.7e-19 101.3 366 27.3
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 8.4e-19 99.0 343 27.7
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 3.2e-18 97.1 398 24.4
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 9.3e-18 95.5 350 25.7
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 4.6e-17 93.2 361 23.0
Gohir.D11G142600 Gossypium hirsutum HOM05D007853 ORTHO05D009873 5.1e-16 89.7 337 26.7
TAR636G2687 Trochodendron aralioides HOM05D007853 ORTHO05D009873 5.1e-16 89.7 315 26.7
Gorai.007G152900 Gossypium raimondii HOM05D007853 ORTHO05D009873 8.7e-16 89.0 337 26.7
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 8.7e-16 89.0 370 23.2
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.5e-15 88.2 206 29.6
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 1.5e-15 88.2 76 52.6
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 1.9e-15 87.8 221 25.8
Gohir.A11G136300 Gossypium hirsutum HOM05D007853 ORTHO05D009873 4.3e-15 86.7 337 26.1
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 4.3e-15 86.7 211 29.9
Thecc.01G228200 Theobroma cacao HOM05D007853 ORTHO05D009873 4.3e-15 86.7 336 26.2
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.3e-14 85.1 375 24.8
Duzib133G0551 Durio zibethinus HOM05D007853 ORTHO05D009873 6.3e-14 82.8 319 26.0
Lj1C83T5 Lonicera japonica HOM05D007853 ORTHO05D009873 6.3e-14 82.8 367 23.4
Ciclev10020523m.g Citrus clementina HOM05D007853 ORTHO05D009873 8.2e-14 82.4 385 23.1
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.2e-14 82.4 91 46.2
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 1.5e-12 78.2 337 24.6
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 5.9e-12 76.3 347 23.9
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 7.7e-12 75.9 345 24.1
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 1.0e-11 75.5 347 24.2
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.0e-11 75.5 344 23.3
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 2.2e-11 74.3 59 61.0
RcHm_v2.0_Chr6g0285141 Rosa chinensis HOM05D007853 ORTHO05D009873 3.8e-11 73.6 316 24.4
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 5.5e-10 69.7 210 29.0
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.2e-10 69.3 82 43.9
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 7.2e-10 69.3 96 40.6
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 6.1e-09 66.2 380 23.4
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.0e-08 65.5 98 41.8
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 1.8e-08 64.7 282 25.9
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 1.8e-08 64.7 91 44.0
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 4.8e-06 56.6 211 25.6
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 6.3e-06 56.2 189 24.9


User provided reference genes

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