Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 5.6e-228 793.9 386 100.0
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 3.3e-188 661.8 385 83.6
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.1e-158 562.8 372 72.8
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-154 550.1 376 72.1
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.0e-152 541.6 372 70.2
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.2e-147 526.2 372 68.8
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 6.3e-147 524.6 376 69.4
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 4.0e-141 505.4 362 66.9
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.5e-136 488.0 377 64.5
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.5e-135 486.1 377 64.2
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.6e-132 476.1 276 82.6
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.5e-124 450.3 380 57.1
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 2.3e-120 436.4 377 56.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 5.0e-120 435.3 380 55.8
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 7.5e-116 421.4 370 54.9
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.7e-115 420.2 370 54.9
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 4.9e-115 418.7 378 57.9
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 6.4e-115 418.3 359 56.5
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.6e-113 413.7 373 55.0
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 3.5e-113 412.5 375 55.2
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 6.0e-113 411.8 335 59.4
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 6.0e-113 411.8 372 54.6
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.0e-112 411.0 381 54.3
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.3e-112 410.6 368 55.4
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 3.9e-112 409.1 369 54.7
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.0e-112 408.7 312 65.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 7.3e-111 404.8 366 53.3
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 9.5e-111 404.4 368 53.8
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.2e-110 401.7 372 53.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 8.0e-110 401.4 370 54.9
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 5.2e-109 398.7 369 53.9
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 8.9e-109 397.9 361 54.6
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 5.8e-108 395.2 371 54.4
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 2.2e-107 393.3 370 53.2
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 4.9e-107 392.1 367 54.0
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 4.1e-106 389.0 370 51.9
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 2.0e-105 386.7 367 52.6
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 2.3e-104 383.3 358 52.0
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 3.9e-104 382.5 369 52.8
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 1.5e-103 380.6 361 52.6
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 9.5e-103 377.9 373 53.1
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.1e-102 376.7 364 52.7
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 3.6e-102 375.9 367 49.9
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.7e-102 375.6 379 51.5
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 4.7e-102 375.6 375 50.4
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.4e-101 374.0 372 50.0
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.4e-101 374.0 376 48.9
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 3.1e-101 372.9 379 50.9
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 4.0e-101 372.5 375 50.4
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.5e-100 370.5 356 52.8
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.6e-100 369.8 364 52.5
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 7.5e-100 368.2 365 52.6
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 7.5e-100 368.2 369 50.9
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.7e-99 367.1 372 51.3
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 4.9e-99 365.5 356 50.0
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-98 364.0 227 75.8
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 3.2e-98 362.8 380 47.1
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.6e-97 360.5 361 47.6
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.7e-97 359.8 381 47.0
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 4.6e-97 359.0 374 48.9
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.7e-96 357.1 370 48.4
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.3e-96 356.7 370 48.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 8.6e-96 354.8 388 48.5
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.5e-95 353.2 366 47.8
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 3.3e-95 352.8 379 50.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 7.3e-95 351.7 364 49.2
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 7.3e-95 351.7 377 48.3
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.6e-94 350.5 357 47.1
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 6.2e-94 348.6 376 49.2
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.1e-93 347.8 368 48.6
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.4e-93 346.7 380 47.4
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 4.0e-93 345.9 390 47.2
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 6.8e-93 345.1 370 49.7
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 8.9e-93 344.7 366 46.2
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 8.9e-93 344.7 369 46.9
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 1.5e-92 344.0 369 48.8
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.5e-92 344.0 372 47.0
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.0e-92 343.6 371 47.2
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 4.4e-92 342.4 370 47.6
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 5.8e-92 342.0 369 48.2
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 4.9e-91 339.0 376 48.1
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.1e-90 337.8 370 47.3
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.4e-90 336.7 374 47.6
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 4.1e-90 335.9 369 46.6
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.6e-89 334.0 374 46.0
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.1e-89 333.6 386 45.6
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 2.7e-89 333.2 365 46.6
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 3.5e-89 332.8 378 46.6
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.3e-88 330.9 367 49.6
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.7e-88 330.5 370 48.9
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 5.1e-88 328.9 367 46.3
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 6.6e-88 328.6 376 47.3
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 5.6e-87 325.5 376 45.7
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 5.6e-87 325.5 376 45.7
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.6e-86 323.9 372 45.2
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 6.9e-85 318.5 379 43.5
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 1.5e-84 317.4 374 43.0
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.6e-84 316.6 376 45.2
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 4.9e-83 312.4 359 46.0
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 6.4e-83 312.0 382 44.5
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 2.7e-81 306.6 384 44.8
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.0e-80 304.7 389 43.4
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 3.0e-80 303.1 382 44.8
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 3.9e-80 302.8 368 44.6
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 3.9e-80 302.8 365 45.2
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 5.1e-80 302.4 362 44.5
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 8.7e-80 301.6 371 41.0
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 1.1e-79 301.2 370 41.9
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.9e-79 300.4 369 42.5
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 2.8e-78 296.6 375 42.7
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 3.6e-78 296.2 266 50.8
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 8.1e-78 295.0 367 44.7
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 1.1e-77 294.7 374 42.0
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 374 42.2
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 1.8e-77 293.9 266 53.0
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 5.3e-77 292.4 375 42.7
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 9.9e-76 288.1 370 42.7
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.3e-75 287.7 387 43.7
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 2.2e-75 287.0 369 42.8
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 2.2e-75 287.0 359 42.6
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.4e-74 284.3 311 45.3
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 2.4e-74 283.5 368 43.2
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 1.6e-73 280.8 268 50.0
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.9e-71 273.9 245 54.3
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 3.7e-70 269.6 365 40.8
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 4.9e-67 259.2 292 46.9
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 8.4e-67 258.5 319 39.2
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.9e-63 247.3 209 58.9
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 7.6e-60 235.3 363 36.9
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.1e-57 227.3 215 49.3
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 8.7e-56 221.9 260 45.0
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 3.4e-52 209.9 223 44.8
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 4.6e-49 199.5 191 52.9
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.6e-39 167.2 198 45.5
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 2.9e-35 153.7 188 43.6
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.6e-33 147.9 388 30.9
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.0e-32 143.7 386 31.6
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 5.9e-28 129.4 378 28.3
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 1.0e-27 128.6 354 29.1
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 6.5e-27 125.9 156 38.5
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.7e-25 120.6 342 28.7
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.4e-24 118.2 383 26.9
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 3.0e-24 117.1 370 27.3
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.2e-24 116.3 131 44.3
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 6.7e-24 115.9 343 27.1
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.5e-23 114.8 349 27.2
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 3.3e-23 113.6 343 26.5
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 7.5e-23 112.5 85 54.1
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 2.8e-22 110.5 336 27.1
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 2.8e-22 110.5 336 27.1
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 4.8e-22 109.8 319 27.6
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 8.2e-22 109.0 346 27.7
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.4e-21 108.2 114 50.0
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.8e-21 107.8 349 28.7
Lalb_Chr03g0041891 Lupinus albus HOM05D007853 ORTHO05D009873 7.0e-21 105.9 351 27.1
HanXRQChr01g0014671 Helianthus annuus HOM05D007853 ORTHO05D009873 9.1e-21 105.5 355 27.0
QL09p044713 Quercus lobata HOM05D007853 ORTHO05D009873 3.5e-20 103.6 390 25.9
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.0e-19 102.1 388 25.5
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 1.0e-19 102.1 360 27.2
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 1.0e-19 102.1 349 27.5
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 2.9e-19 100.5 383 25.1
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 3.8e-19 100.1 341 27.3
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 6.5e-19 99.4 388 25.5
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.9e-18 97.8 399 25.6
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.9e-18 97.8 260 31.5
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 9.4e-18 95.5 392 25.5
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 1.2e-17 95.1 381 26.5
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 1.2e-17 95.1 394 25.6
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.7e-17 93.2 386 25.1
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 1.2e-15 88.6 348 24.7
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-15 88.6 92 45.7
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.4e-15 87.0 87 47.1
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.2e-14 84.3 389 24.7
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.2e-09 68.6 98 41.8
CiPaw.11G008800 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.4e-08 65.1 65 55.4
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.3e-08 64.3 366 23.0
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 5.2e-08 63.2 98 41.8


User provided reference genes

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