Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.0e-92 342.4 170 100.0
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 5.4e-66 254.6 173 76.9
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 4.7e-62 241.5 172 73.8
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.2e-57 226.9 175 72.6
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.2e-54 216.9 169 72.2
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 4.7e-54 214.9 169 71.0
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 6.1e-54 214.5 169 66.9
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.5e-52 209.9 153 71.2
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 4.4e-52 208.4 157 66.9
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.1e-50 203.8 167 62.9
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 1.0e-48 197.2 162 63.0
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 2.5e-47 192.6 168 61.3
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.3e-47 191.8 151 64.9
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 5.6e-47 191.4 117 76.1
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 7.3e-47 191.0 154 63.0
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.6e-46 189.9 150 64.0
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 2.1e-46 189.5 167 61.1
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.1e-46 189.5 161 61.5
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 2.8e-46 189.1 162 60.5
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 3.6e-46 188.7 156 63.5
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 8.0e-46 187.6 145 66.9
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.0e-45 187.2 152 67.1
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 1.4e-45 186.8 164 59.1
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.3e-45 186.0 140 68.6
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 3.4e-44 182.2 109 74.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 4.4e-44 181.8 156 62.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 1.3e-43 180.3 116 69.0
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.3e-43 180.3 117 70.9
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 1.3e-43 180.3 158 58.9
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 2.2e-43 179.5 171 59.1
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 2.2e-43 179.5 137 65.7
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.9e-43 179.1 169 56.2
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.4e-43 177.9 159 57.2
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 1.1e-42 177.2 152 57.9
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.1e-42 177.2 152 57.9
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.1e-42 177.2 158 60.8
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.1e-42 177.2 125 69.6
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 5.4e-42 174.9 152 62.5
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.7e-41 172.6 159 56.0
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.0e-41 171.4 153 55.6
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.0e-40 170.6 92 81.5
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 2.3e-40 169.5 147 61.2
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 2.3e-40 169.5 149 58.4
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 1.1e-39 167.2 173 53.2
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.9e-39 166.4 156 58.3
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 3.3e-39 165.6 153 58.8
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 9.5e-39 164.1 100 77.0
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.6e-38 163.3 161 56.5
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.6e-38 163.3 153 53.6
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 6.2e-38 161.4 178 52.2
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 6.2e-38 161.4 246 41.5
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 8.1e-38 161.0 155 52.3
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.4e-37 160.2 170 49.4
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 1.8e-37 159.8 154 54.5
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.2e-36 157.1 160 54.4
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.0e-36 156.4 133 56.4
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 2.2e-35 152.9 269 38.3
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.9e-35 152.5 184 45.1
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.7e-35 152.1 162 51.9
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 2.1e-33 146.4 104 58.7
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 2.7e-33 146.0 103 61.2
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 2.7e-33 146.0 102 64.7
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 2.7e-33 146.0 104 61.5
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 4.6e-33 145.2 103 64.1
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 7.8e-33 144.4 129 55.0
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 7.8e-33 144.4 103 65.0
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 7.8e-33 144.4 103 63.1
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 7.8e-33 144.4 138 55.1
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.0e-32 144.1 102 63.7
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.7e-32 143.3 103 60.2
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 5.1e-32 141.7 102 62.7
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 5.1e-32 141.7 103 57.3
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 5.1e-32 141.7 102 61.8
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 6.6e-32 141.4 104 58.7
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.6e-32 141.4 103 56.3
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 6.6e-32 141.4 103 61.2
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 6.6e-32 141.4 137 52.6
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 1.1e-31 140.6 103 61.2
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 1.1e-31 140.6 171 48.5
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.5e-31 140.2 103 61.2
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 2.5e-31 139.4 103 56.3
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 2.5e-31 139.4 103 59.2
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 3.3e-31 139.0 129 55.0
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 3.3e-31 139.0 103 60.2
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 4.3e-31 138.7 119 56.3
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 5.6e-31 138.3 103 59.2
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 5.6e-31 138.3 103 59.2
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 7.3e-31 137.9 103 60.2
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 7.3e-31 137.9 137 52.6
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 7.3e-31 137.9 139 49.6
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 9.5e-31 137.5 103 59.2
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 9.5e-31 137.5 175 43.4
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 9.5e-31 137.5 103 61.2
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.2e-30 137.1 160 48.1
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 1.6e-30 136.7 118 55.9
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 1.6e-30 136.7 103 59.2
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.1e-30 136.3 138 51.4
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 2.1e-30 136.3 103 58.3
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 2.1e-30 136.3 173 47.4
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.1e-30 136.3 103 56.3
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 2.1e-30 136.3 172 47.1
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 2.8e-30 136.0 103 58.3
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 2.8e-30 136.0 103 59.2
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 2.8e-30 136.0 161 46.0
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 2.8e-30 136.0 103 56.3
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 3.6e-30 135.6 130 53.1
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 3.6e-30 135.6 103 58.3
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 3.6e-30 135.6 103 58.3
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 4.7e-30 135.2 158 45.6
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 4.7e-30 135.2 166 41.6
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 6.2e-30 134.8 103 58.3
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 6.2e-30 134.8 167 47.9
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 6.2e-30 134.8 103 58.3
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 6.2e-30 134.8 172 44.2
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 8.1e-30 134.4 157 49.0
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.1e-29 134.0 103 58.3
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 1.1e-29 134.0 102 56.9
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.1e-29 134.0 127 52.8
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.4e-29 133.7 151 49.0
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.4e-29 133.7 126 53.2
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.4e-29 133.7 126 53.2
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.4e-29 133.7 103 57.3
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 2.3e-29 132.9 151 48.3
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 2.3e-29 132.9 151 48.3
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.1e-29 132.5 141 48.9
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 3.1e-29 132.5 154 46.8
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 3.1e-29 132.5 172 44.2
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.0e-29 132.1 173 42.8
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 5.2e-29 131.7 103 57.3
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.2e-29 131.7 102 57.8
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.2e-29 131.7 154 46.8
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 5.2e-29 131.7 150 50.7
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 6.8e-29 131.3 139 50.4
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 8.9e-29 131.0 133 51.9
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 1.2e-28 130.6 165 47.3
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 1.5e-28 130.2 102 57.8
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.0e-28 129.8 197 40.6
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 2.0e-28 129.8 164 43.9
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 2.6e-28 129.4 119 52.1
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 2.6e-28 129.4 103 55.3
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.4e-28 129.0 102 57.8
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 3.4e-28 129.0 173 46.2
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 3.4e-28 129.0 161 49.1
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 4.4e-28 128.6 133 51.1
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 4.4e-28 128.6 98 57.1
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 4.4e-28 128.6 165 45.5
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 9.9e-28 127.5 102 54.9
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.3e-27 127.1 174 43.7
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 2.2e-27 126.3 108 58.3
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 2.2e-27 126.3 166 45.2
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.2e-27 126.3 102 55.9
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.9e-27 125.9 133 51.1
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.4e-27 124.8 167 44.9
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.4e-27 124.4 167 44.9
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 7.1e-26 121.3 172 44.2
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 4.6e-25 118.6 103 50.5
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.1e-24 115.2 91 57.1
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 6.6e-24 114.8 171 39.8
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.9e-23 113.2 132 49.2
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.9e-23 113.2 132 49.2
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 5.6e-23 111.7 123 48.8
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 7.3e-23 111.3 59 79.7
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.6e-20 102.8 74 67.6
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.9e-16 89.0 105 54.3
CSS0019058 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 8.7e-16 87.8 116 50.0
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 3.3e-15 85.9 73 54.8
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 5.6e-15 85.1 55 65.5
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 7.3e-15 84.7 82 59.8
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 1.3e-14 84.0 104 51.0
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 2.1e-14 83.2 109 45.0
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 2.1e-14 83.2 61 65.6
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 2.8e-14 82.8 101 46.5
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 8.1e-14 81.3 78 56.4
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 1.1e-13 80.9 56 58.9
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 9.0e-13 77.8 95 50.5
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.3e-11 73.9 99 44.4
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.7e-11 73.6 102 42.2
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 6.4e-11 71.6 49 59.2
HanXRQChr15g0476661 Helianthus annuus HOM05D003884 ORTHO05D004482 8.4e-11 71.2 105 44.8
TPR.G36109 Trifolium pratense HOM05D003884 ORTHO05D004482 2.4e-10 69.7 115 45.2
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 2.7e-09 66.2 122 34.4
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 7.4e-07 58.2 53 47.2


User provided reference genes

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