Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 6.5e-128 460.7 226 100.0
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 5.6e-79 298.1 201 76.6
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.1e-70 269.6 197 73.1
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 3.6e-70 268.9 197 73.1
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.7e-67 260.0 192 72.9
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 5.6e-63 245.0 198 66.2
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.8e-61 240.0 206 63.1
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 9.0e-61 237.7 200 63.5
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.9e-59 232.6 199 64.3
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.1e-58 230.7 204 61.8
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 7.1e-58 228.0 192 62.0
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 4.6e-57 225.3 201 61.2
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.8e-56 223.4 175 66.3
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.8e-56 223.4 175 66.3
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 1.8e-56 223.4 202 60.9
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 3.0e-56 222.6 169 69.8
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 6.7e-56 221.5 195 60.0
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 8.7e-56 221.1 122 81.1
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 2.5e-55 219.5 129 78.3
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 7.4e-55 218.0 186 61.8
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 9.6e-55 217.6 200 59.5
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 9.6e-55 217.6 130 79.2
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 1.3e-54 217.2 175 64.6
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.3e-54 217.2 174 64.9
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.6e-54 216.9 199 60.8
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 1.6e-54 216.9 174 64.4
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.6e-54 216.9 168 64.9
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.6e-54 216.9 204 59.3
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.1e-54 216.5 196 62.2
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 2.8e-54 216.1 133 74.4
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 6.3e-54 214.9 184 64.1
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 8.2e-54 214.5 192 57.3
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 8.2e-54 214.5 166 65.1
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 8.2e-54 214.5 166 65.1
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.1e-53 214.2 211 56.9
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 1.1e-53 214.2 179 61.5
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.4e-53 213.0 185 61.1
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 4.1e-53 212.2 129 76.0
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 4.1e-53 212.2 129 76.0
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 4.1e-53 212.2 181 63.0
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 4.1e-53 212.2 177 62.1
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 5.3e-53 211.8 129 76.0
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 5.3e-53 211.8 165 64.8
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 6.9e-53 211.5 193 59.6
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 9.0e-53 211.1 177 62.7
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.5e-52 210.3 195 60.0
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 2.0e-52 209.9 196 58.2
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.6e-52 209.5 177 61.6
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 2.6e-52 209.5 165 64.2
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.4e-52 209.1 187 58.8
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.4e-52 209.1 177 61.6
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.5e-52 208.8 178 62.9
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.8e-52 208.4 114 80.7
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 7.6e-52 208.0 200 57.5
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 7.6e-52 208.0 116 80.2
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.0e-51 207.6 171 64.9
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.3e-51 207.2 172 63.4
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.7e-51 206.8 114 81.6
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.7e-51 206.8 176 61.4
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 2.2e-51 206.5 191 60.2
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.9e-51 206.1 163 63.8
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 6.5e-51 204.9 189 60.3
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 6.5e-51 204.9 136 68.4
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 8.4e-51 204.5 154 66.9
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.1e-50 204.1 185 57.8
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 1.1e-50 204.1 182 59.9
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.4e-50 203.8 110 83.6
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 2.5e-50 203.0 189 59.8
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.5e-50 203.0 159 61.6
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 4.2e-50 202.2 191 60.7
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 4.2e-50 202.2 121 76.9
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 7.2e-50 201.4 163 60.7
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 7.2e-50 201.4 165 62.4
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 9.3e-50 201.1 124 74.2
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 1.6e-49 200.3 183 59.6
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 1.6e-49 200.3 124 74.2
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 2.1e-49 199.9 133 69.9
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 6.1e-49 198.4 117 77.8
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 2.3e-48 196.4 192 55.2
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.3e-48 196.4 170 60.6
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.0e-48 196.1 167 59.3
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 3.9e-48 195.7 115 78.3
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 6.7e-48 194.9 144 65.3
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 1.1e-47 194.1 110 79.1
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.5e-47 193.0 166 61.4
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 2.5e-47 193.0 163 58.3
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 2.5e-47 193.0 178 56.7
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 3.7e-46 189.1 178 59.0
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 6.3e-46 188.3 196 53.6
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 9.0e-45 184.5 195 55.9
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 4.5e-44 182.2 176 54.5
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 4.5e-44 182.2 113 76.1
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.9e-43 179.5 115 72.2
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.2e-41 174.1 205 49.8
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.6e-41 172.6 104 73.1
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 4.8e-38 162.2 125 60.8
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 3.1e-37 159.5 164 52.4
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 4.1e-37 159.1 121 60.3
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.4e-36 156.0 94 73.4
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 3.2e-34 149.4 194 43.8
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 6.7e-32 141.7 135 54.1
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.1e-31 141.0 145 50.3
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 3.3e-31 139.4 106 59.4
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.7e-30 137.1 161 47.2
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.7e-30 137.1 170 45.3
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 2.2e-30 136.7 117 55.6
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 3.7e-30 136.0 111 56.8
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 3.7e-30 136.0 116 51.7
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.7e-30 136.0 186 43.5
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 3.7e-30 136.0 141 51.8
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.8e-30 135.6 148 49.3
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 4.8e-30 135.6 170 44.7
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.1e-29 134.4 163 43.6
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.1e-29 134.4 105 59.0
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 1.4e-29 134.0 133 51.9
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.8e-29 133.7 139 50.4
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 3.1e-29 132.9 138 48.6
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 3.1e-29 132.9 123 52.8
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 4.1e-29 132.5 108 56.5
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 4.1e-29 132.5 167 43.7
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.2e-28 131.0 181 42.0
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 2.0e-28 130.2 134 49.3
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 2.6e-28 129.8 106 54.7
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 3.5e-28 129.4 117 53.0
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.5e-28 129.0 109 54.1
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.9e-28 128.6 156 44.2
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 5.9e-28 128.6 135 46.7
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 5.9e-28 128.6 109 54.1
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 7.7e-28 128.3 128 50.0
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.0e-27 127.9 142 50.0
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 1.3e-27 127.5 117 50.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.7e-27 127.1 109 51.4
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.7e-27 127.1 161 44.7
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.2e-27 126.7 98 62.2
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 2.2e-27 126.7 105 55.2
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.2e-27 126.7 105 55.2
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.8e-27 125.9 109 53.2
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 5.0e-27 125.6 162 43.2
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.5e-27 124.8 109 52.3
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 8.5e-27 124.8 141 47.5
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 8.5e-27 124.8 62 87.1
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.5e-26 124.0 61 90.2
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.9e-26 123.6 106 50.9
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 4.2e-26 122.5 105 48.6
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 9.4e-26 121.3 159 45.3
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 2.1e-25 120.2 169 42.0
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.6e-25 119.4 132 44.7
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 3.6e-25 119.4 172 39.5
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 4.7e-25 119.0 149 43.0
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.1e-25 118.6 94 59.6
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.3e-24 116.7 135 43.7
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 6.7e-24 115.2 115 47.0
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 8.8e-24 114.8 160 42.5
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.0e-23 113.6 123 43.9
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.6e-23 113.2 128 47.7
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 5.7e-23 112.1 102 55.9
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 5.7e-23 112.1 146 43.8
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.8e-21 107.1 139 43.9
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 2.4e-21 106.7 139 43.9
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 3.5e-20 102.8 55 78.2
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 3.5e-20 102.8 114 52.6
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 5.9e-20 102.1 63 71.4
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.7e-19 100.5 123 44.7
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.9e-18 97.1 245 29.4
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 5.5e-18 95.5 135 37.0
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 6.1e-17 92.0 94 45.7
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 8.8e-16 88.2 268 26.9
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 2.6e-15 86.7 104 53.8
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.7e-14 84.0 59 61.0
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.6e-09 67.4 75 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 2.1e-09 67.0 95 35.8
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.3e-08 63.5 58 53.4
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.2e-07 61.2 67 47.8
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 3.4e-07 59.7 51 58.8
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 9.8e-07 58.2 60 45.0
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 4.9e-06 55.8 46 56.5


User provided reference genes

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