Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 5.3e-59 230.7 109 100.0
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 1.0e-30 136.7 174 46.0
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 2.0e-29 132.5 174 44.8
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 1.3e-28 129.8 66 89.4
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 8.3e-28 127.1 174 43.1
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 2.3e-25 119.0 91 69.2
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 3.8e-25 118.2 174 40.8
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 8.6e-25 117.1 168 41.7
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 1.1e-24 116.7 174 40.8
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 1.6e-23 112.8 142 41.5
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 8.0e-23 110.5 166 39.2
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 2.3e-22 109.0 175 36.6
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 2.3e-22 109.0 176 35.8
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 4.0e-22 108.2 163 38.0
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 4.0e-22 108.2 172 36.0
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 5.2e-22 107.8 172 36.6
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 5.2e-22 107.8 165 37.0
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 6.8e-22 107.5 164 37.2
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 8.9e-22 107.1 172 35.5
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 1.2e-21 106.7 172 36.0
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 1.5e-21 106.3 164 36.6
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 2.0e-21 105.9 173 34.1
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 2.0e-21 105.9 173 35.8
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 4.4e-21 104.8 172 34.3
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 4.4e-21 104.8 176 34.1
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 4.4e-21 104.8 176 35.2
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 7.5e-21 104.0 155 38.1
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 9.8e-21 103.6 176 34.7
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 1.7e-20 102.8 172 33.1
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 1.7e-20 102.8 166 35.5
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 2.2e-20 102.4 175 34.3
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 2.2e-20 102.4 170 34.7
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.7e-20 101.7 172 34.9
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.7e-20 101.7 172 34.9
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 3.7e-20 101.7 172 34.9
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 4.9e-20 101.3 163 36.2
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 6.3e-20 100.9 172 35.5
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 8.3e-20 100.5 170 33.5
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 8.3e-20 100.5 169 35.5
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 8.3e-20 100.5 169 35.5
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 8.3e-20 100.5 172 34.9
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 1.4e-19 99.8 180 32.8
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.8e-19 99.4 170 33.5
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.8e-19 99.4 170 33.5
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 1.8e-19 99.4 173 34.1
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.8e-19 99.4 175 34.3
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 2.4e-19 99.0 170 32.9
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.4e-19 99.0 170 32.9
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 2.4e-19 99.0 168 35.7
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 2.4e-19 99.0 175 34.3
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 3.1e-19 98.6 171 35.1
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 5.4e-19 97.8 166 34.9
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 7.0e-19 97.4 176 33.5
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 7.0e-19 97.4 175 33.7
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 9.2e-19 97.1 171 33.9
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 1.2e-18 96.7 176 31.8
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 1.2e-18 96.7 197 32.0
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 1.6e-18 96.3 171 33.9
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 3.5e-18 95.1 166 33.7
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 4.5e-18 94.7 172 32.6
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 4.5e-18 94.7 171 33.3
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 4.5e-18 94.7 169 33.7
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 5.9e-18 94.4 166 33.1
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 5.9e-18 94.4 173 33.5
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 5.9e-18 94.4 121 42.1
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 7.8e-18 94.0 166 33.7
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 7.8e-18 94.0 172 33.1
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.0e-17 93.6 172 32.6
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 1.0e-17 93.6 175 31.4
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 1.0e-17 93.6 175 31.4
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 1.0e-17 93.6 176 31.2
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 1.0e-17 93.6 197 32.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 1.0e-17 93.6 166 34.3
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 1.3e-17 93.2 176 31.8
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.3e-17 93.2 171 33.3
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 1.7e-17 92.8 172 33.1
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.3e-17 92.4 172 32.0
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 2.3e-17 92.4 171 32.2
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 2.9e-17 92.0 172 32.0
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 2.9e-17 92.0 172 32.0
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 2.9e-17 92.0 172 32.0
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 2.9e-17 92.0 165 33.3
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 3.8e-17 91.7 172 31.4
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 3.8e-17 91.7 172 31.4
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 3.8e-17 91.7 172 32.6
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 5.0e-17 91.3 172 32.0
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 6.6e-17 90.9 172 32.0
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 6.6e-17 90.9 172 33.7
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 6.6e-17 90.9 180 28.9
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 8.6e-17 90.5 172 30.8
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 1.1e-16 90.1 172 31.4
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 1.5e-16 89.7 177 32.8
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 2.5e-16 89.0 168 32.1
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 2.5e-16 89.0 177 32.2
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 5.6e-16 87.8 173 31.8
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 5.6e-16 87.8 172 30.2
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 1.6e-15 86.3 174 32.2
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 1.6e-15 86.3 166 30.1
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 2.1e-15 85.9 173 26.6
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 2.1e-15 85.9 172 30.2
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 3.6e-15 85.1 170 30.6
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 3.6e-15 85.1 165 30.9
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 5.2e-14 81.3 207 28.0
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 6.8e-14 80.9 153 32.7
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 8.9e-14 80.5 50 74.0
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 7.5e-13 77.4 50 66.0
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 1.7e-12 76.3 45 75.6
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 4.9e-12 74.7 50 66.0
Hund07659 Selenicereus undatus HOM05D005266 ORTHO05D006416 4.9e-12 74.7 87 42.5
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.9e-11 72.8 84 42.9
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 1.9e-11 72.8 50 64.0
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 9.2e-11 70.5 122 32.8
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 4.6e-10 68.2 173 26.0
CDE08G0252 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 6.0e-10 67.8 45 68.9
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 1.3e-09 66.6 38 68.4
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 2.3e-09 65.9 50 52.0
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 2.3e-09 65.9 48 58.3
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 3.9e-09 65.1 44 68.2
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 8.6e-09 63.9 130 30.0
ATR0589G038 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.5e-08 63.2 42 59.5
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 1.8e-06 56.2 168 23.8
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 2.3e-06 55.8 171 22.8


User provided reference genes

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