Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G198200 Theobroma cacao HOM05D002315 ORTHO05D002416 4.0e-75 284.6 139 100.0
COL.COLO4_13217 Corchorus olitorius HOM05D002315 ORTHO05D002416 3.5e-23 112.1 63 88.9
COL.COLO4_34967 Corchorus olitorius HOM05D002315 ORTHO05D002416 3.5e-23 112.1 63 88.9
Gohir.A03G150600 Gossypium hirsutum HOM05D002315 ORTHO05D002416 5.6e-21 104.8 63 76.2
Gohir.D02G173500 Gossypium hirsutum HOM05D002315 ORTHO05D002416 7.3e-21 104.4 63 76.2
TWI36G1103 Tripterygium wilfordii HOM05D002315 ORTHO05D002416 2.1e-20 102.8 64 78.1
Gorai.005G195200 Gossypium raimondii HOM05D002315 ORTHO05D002416 3.6e-20 102.1 63 74.6
Potri.001G325200 Populus trichocarpa HOM05D002315 ORTHO05D002416 8.9e-19 97.4 62 72.6
TAR622G1351 Trochodendron aralioides HOM05D002315 ORTHO05D002416 4.4e-18 95.1 62 72.6
QL03p050787 Quercus lobata HOM05D002315 ORTHO05D002416 5.8e-18 94.7 66 71.2
TWI34G0595 Tripterygium wilfordii HOM05D002315 ORTHO05D002416 9.9e-18 94.0 61 75.4
Dinv33306 Davidia involucrata HOM05D002315 ORTHO05D002416 1.7e-17 93.2 62 74.2
Thecc.04G042400 Theobroma cacao HOM05D002315 ORTHO05D002416 1.7e-17 93.2 65 67.7
Dinv25635 Davidia involucrata HOM05D002315 ORTHO05D002416 2.9e-17 92.4 62 72.6
Actinidia05874 Actinidia chinensis HOM05D002315 ORTHO05D002416 4.9e-17 91.7 62 75.8
Atru.chr11.2395 Acer truncatum HOM05D002315 ORTHO05D002416 1.1e-16 90.5 66 69.7
GSVIVG01033033001 Vitis vinifera HOM05D002315 ORTHO05D002416 1.1e-16 90.5 62 72.6
Duzib147G1329 Durio zibethinus HOM05D002315 ORTHO05D002416 1.4e-16 90.1 65 64.6
Phvul.001G091000 Phaseolus vulgaris HOM05D002315 ORTHO05D002416 1.4e-16 90.1 62 69.4
Sabra16G0207700 Salix brachista HOM05D002315 ORTHO05D002416 1.4e-16 90.1 62 69.4
CiPaw.03G004400 Carya illinoinensis HOM05D002315 ORTHO05D002416 4.2e-16 88.6 62 67.7
Ciclev10031648m.g Citrus clementina HOM05D002315 ORTHO05D002416 4.2e-16 88.6 68 70.6
VMungo1383G2624 Vigna mungo HOM05D002315 ORTHO05D002416 4.2e-16 88.6 62 67.7
Manes.04G089800 Manihot esculenta HOM05D002315 ORTHO05D002416 5.4e-16 88.2 62 71.0
Manes.11G080100 Manihot esculenta HOM05D002315 ORTHO05D002416 5.4e-16 88.2 64 67.2
Potri.017G063500 Populus trichocarpa HOM05D002315 ORTHO05D002416 5.4e-16 88.2 62 66.1
Migut.F00032 Erythranthe guttata HOM05D002315 ORTHO05D002416 7.1e-16 87.8 62 66.1
Prupe.3G310500 Prunus persica HOM05D002315 ORTHO05D002416 7.1e-16 87.8 62 71.0
ClCG05G013890 Citrullus lanatus HOM05D002315 ORTHO05D002416 9.3e-16 87.4 62 71.0
MELO3C014925.2 Cucumis melo HOM05D002315 ORTHO05D002416 1.6e-15 86.7 62 71.0
Hma1.2p1_0525F.1_g172655 Hydrangea macrophylla HOM05D002315 ORTHO05D002416 1.6e-15 86.7 62 67.7
TAR629G2302 Trochodendron aralioides HOM05D002315 ORTHO05D002416 1.6e-15 86.7 63 66.7
Haze_12467 Corylus avellana HOM05D002315 ORTHO05D002416 2.7e-15 85.9 66 65.2
Haze_14915 Corylus avellana HOM05D002315 ORTHO05D002416 2.7e-15 85.9 62 69.4
Duzib264G0534 Durio zibethinus HOM05D002315 ORTHO05D002416 2.7e-15 85.9 65 60.0
Duzib264G0943 Durio zibethinus HOM05D002315 ORTHO05D002416 2.7e-15 85.9 65 60.0
Rhsim10G0003500 Rhododendron simsii HOM05D002315 ORTHO05D002416 2.7e-15 85.9 63 66.7
CSS0017281 Camellia sinensis var. sinensis HOM05D002315 ORTHO05D002416 3.5e-15 85.5 62 67.7
RcHm_v2.0_Chr2g0176161 Rosa chinensis HOM05D002315 ORTHO05D002416 3.5e-15 85.5 62 69.4
COL.COLO4_13314 Corchorus olitorius HOM05D002315 ORTHO05D002416 4.6e-15 85.1 66 63.6
CsaV3_3G026730 Cucumis sativus L. HOM05D002315 ORTHO05D002416 6.0e-15 84.7 62 69.4
Lj7A613T67 Lonicera japonica HOM05D002315 ORTHO05D002416 6.0e-15 84.7 63 66.7
MD17G1010400 Malus domestica HOM05D002315 ORTHO05D002416 6.0e-15 84.7 62 69.4
Sabra17G0057400 Salix brachista HOM05D002315 ORTHO05D002416 6.0e-15 84.7 62 62.9
Sabra01G0044000 Salix brachista HOM05D002315 ORTHO05D002416 7.8e-15 84.3 67 64.2
Atru.chr6.2617 Acer truncatum HOM05D002315 ORTHO05D002416 1.0e-14 84.0 62 64.5
FvH4_4g23141 Fragaria vesca HOM05D002315 ORTHO05D002416 1.0e-14 84.0 68 67.6
FAN12G3171 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.0e-14 84.0 68 67.6
FAN02G4142 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.3e-14 83.6 78 59.0
Glyma.16G052000 Glycine max HOM05D002315 ORTHO05D002416 1.3e-14 83.6 62 64.5
Medtr7g083410 Medicago truncatula HOM05D002315 ORTHO05D002416 1.3e-14 83.6 63 63.5
FvH4_6g53990 Fragaria vesca HOM05D002315 ORTHO05D002416 1.7e-14 83.2 78 59.0
FAN05G4260 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.7e-14 83.2 78 59.0
FAN09G0834 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.7e-14 83.2 78 59.0
FAN14G5132 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.7e-14 83.2 78 59.0
MBI11_g08323_MAGBIO Magnolia biondii HOM05D002315 ORTHO05D002416 1.7e-14 83.2 63 68.3
MD16G1125700 Malus domestica HOM05D002315 ORTHO05D002416 1.7e-14 83.2 66 69.7
QL02p070511 Quercus lobata HOM05D002315 ORTHO05D002416 1.7e-14 83.2 62 66.1
Glyma.19G098500 Glycine max HOM05D002315 ORTHO05D002416 2.3e-14 82.8 64 65.6
Manes.12G006400 Manihot esculenta HOM05D002315 ORTHO05D002416 2.3e-14 82.8 96 53.1
Potri.001G061100 Populus trichocarpa HOM05D002315 ORTHO05D002416 2.3e-14 82.8 67 65.7
Cpa.g.sc70.105 Carica papaya HOM05D002315 ORTHO05D002416 3.0e-14 82.4 63 63.5
DCAR_014488 Daucus carota HOM05D002315 ORTHO05D002416 3.0e-14 82.4 62 64.5
Nn4g22210 Nelumbo nucifera HOM05D002315 ORTHO05D002416 3.0e-14 82.4 62 67.7
MD09G1006500 Malus domestica HOM05D002315 ORTHO05D002416 3.9e-14 82.0 62 64.5
Nn3g16350 Nelumbo nucifera HOM05D002315 ORTHO05D002416 3.9e-14 82.0 62 66.1
Peaxi162Scf00420g00727 Petunia axillaris HOM05D002315 ORTHO05D002416 5.1e-14 81.6 62 66.1
Ca_08112_v3 Cicer arietinum L. HOM05D002315 ORTHO05D002416 8.7e-14 80.9 62 64.5
CSS0039605 Camellia sinensis var. sinensis HOM05D002315 ORTHO05D002416 1.1e-13 80.5 62 62.9
TAR374G1254 Trochodendron aralioides HOM05D002315 ORTHO05D002416 1.1e-13 80.5 62 66.1
Ciclev10015568m.g Citrus clementina HOM05D002315 ORTHO05D002416 1.5e-13 80.1 62 59.7
Nitab4.5_0002172g0020 Nicotiana tabacum HOM05D002315 ORTHO05D002416 1.5e-13 80.1 62 64.5
Oeu035363.1 Olea europaea HOM05D002315 ORTHO05D002416 1.5e-13 80.1 62 61.3
RcHm_v2.0_Chr4g0429481 Rosa chinensis HOM05D002315 ORTHO05D002416 1.5e-13 80.1 67 65.7
MD13G1124800 Malus domestica HOM05D002315 ORTHO05D002416 1.9e-13 79.7 66 66.7
Nitab4.5_0000519g0150 Nicotiana tabacum HOM05D002315 ORTHO05D002416 1.9e-13 79.7 62 64.5
CiPaw.06G106700 Carya illinoinensis HOM05D002315 ORTHO05D002416 3.3e-13 79.0 68 64.7
SalBow4G0363 Salvia bowleyana HOM05D002315 ORTHO05D002416 3.3e-13 79.0 62 59.7
SalBow4G2531 Salvia bowleyana HOM05D002315 ORTHO05D002416 3.3e-13 79.0 62 59.7
THA.LOC104814200 Tarenaya hassleriana HOM05D002315 ORTHO05D002416 3.3e-13 79.0 63 63.5
Gohir.D10G080700 Gossypium hirsutum HOM05D002315 ORTHO05D002416 4.3e-13 78.6 67 61.2
Gorai.011G087800 Gossypium raimondii HOM05D002315 ORTHO05D002416 4.3e-13 78.6 67 61.2
SGA_v2.0_scaffold44G16938 Striga asiatica HOM05D002315 ORTHO05D002416 4.3e-13 78.6 62 61.3
FAN11G2039 Fragaria x ananassa HOM05D002315 ORTHO05D002416 7.3e-13 77.8 78 55.1
TWI60G1464 Tripterygium wilfordii HOM05D002315 ORTHO05D002416 7.3e-13 77.8 61 67.2
Actinidia19566 Actinidia chinensis HOM05D002315 ORTHO05D002416 1.3e-12 77.0 62 62.9
FvH4_3g29110 Fragaria vesca HOM05D002315 ORTHO05D002416 1.6e-12 76.6 108 44.4
Gohir.A10G070400 Gossypium hirsutum HOM05D002315 ORTHO05D002416 1.6e-12 76.6 67 59.7
Lj1g0005344 Lotus japonicus HOM05D002315 ORTHO05D002416 1.6e-12 76.6 61 62.3
Aqoxy5G03238 Aquilegia oxysepala HOM05D002315 ORTHO05D002416 2.1e-12 76.3 62 61.3
CANSAT64G1557 Cannabis sativa HOM05D002315 ORTHO05D002416 2.8e-12 75.9 62 61.3
MBI07_g24749_MAGBIO Magnolia biondii HOM05D002315 ORTHO05D002416 2.8e-12 75.9 62 62.9
CAN.G473.142 Capsicum annuum HOM05D002315 ORTHO05D002416 6.2e-12 74.7 62 58.1
Duzib187G0133 Durio zibethinus HOM05D002315 ORTHO05D002416 6.2e-12 74.7 65 55.4
ATR0582G375 Amborella trichopoda HOM05D002315 ORTHO05D002416 1.4e-11 73.6 63 58.7
vmacro18366 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 1.4e-11 73.6 62 66.1
arahy.Tifrunner.gnm1.ann1.JGYC2J Arachis hypogaea HOM05D002315 ORTHO05D002416 1.8e-11 73.2 62 61.3
arahy.Tifrunner.gnm1.ann1.M6NE4G Arachis hypogaea HOM05D002315 ORTHO05D002416 1.8e-11 73.2 62 61.3
Sp3g00070 Schrenkiella parvula HOM05D002315 ORTHO05D002416 1.8e-11 73.2 63 57.1
Psat3g095320 Pisum sativum HOM05D002315 ORTHO05D002416 2.4e-11 72.8 62 59.7
Rhsim08G0040800 Rhododendron simsii HOM05D002315 ORTHO05D002416 3.1e-11 72.4 64 62.5
TPR.G5723 Trifolium pratense HOM05D002315 ORTHO05D002416 3.1e-11 72.4 62 61.3
BcaNung05591 Brassica carinata HOM05D002315 ORTHO05D002416 4.0e-11 72.0 63 55.6
Eucgr.I01620 Eucalyptus grandis HOM05D002315 ORTHO05D002416 5.3e-11 71.6 62 58.1
Aa31LG5G11180 Aethionema arabicum HOM05D002315 ORTHO05D002416 9.0e-11 70.9 63 57.1
CDE05G3060 Ceratophyllum demersum HOM05D002315 ORTHO05D002416 9.0e-11 70.9 62 58.1
FAN21G0555 Fragaria x ananassa HOM05D002315 ORTHO05D002416 1.2e-10 70.5 62 59.7
PSO478G2871 Papaver somniferum HOM05D002315 ORTHO05D002416 1.2e-10 70.5 61 60.7
BcaNung05592 Brassica carinata HOM05D002315 ORTHO05D002416 2.6e-10 69.3 62 54.8
Cc07_g01090 Coffea canephora HOM05D002315 ORTHO05D002416 2.6e-10 69.3 64 56.2
PSO017G1256 Papaver somniferum HOM05D002315 ORTHO05D002416 2.6e-10 69.3 61 59.0
PGR142G4045 Punica granatum HOM05D002315 ORTHO05D002416 2.6e-10 69.3 62 61.3
HanXRQChr14g0451271 Helianthus annuus HOM05D002315 ORTHO05D002416 3.4e-10 68.9 63 61.9
FAN25G1609 Fragaria x ananassa HOM05D002315 ORTHO05D002416 5.8e-10 68.2 62 58.1
Lalb_Chr14g0363761 Lupinus albus HOM05D002315 ORTHO05D002416 5.8e-10 68.2 78 51.3
Aa31LG9G13400 Aethionema arabicum HOM05D002315 ORTHO05D002416 7.6e-10 67.8 62 53.2
Cfa009409 Carpinus fangiana HOM05D002315 ORTHO05D002416 9.9e-10 67.4 66 57.6
ECA238G3722 Erigeron canadensis HOM05D002315 ORTHO05D002416 1.3e-09 67.0 65 55.4
Gohir.D07G238600 Gossypium hirsutum HOM05D002315 ORTHO05D002416 1.3e-09 67.0 66 51.5
MSTRG.24112 Avicennia marina HOM05D002315 ORTHO05D002416 1.7e-09 66.6 62 53.2
Thhalv10021007m.g Eutrema salsugineum HOM05D002315 ORTHO05D002416 2.2e-09 66.2 63 50.8
Gohir.A07G231400 Gossypium hirsutum HOM05D002315 ORTHO05D002416 2.2e-09 66.2 66 51.5
AUR62003390 Chenopodium quinoa HOM05D002315 ORTHO05D002416 3.8e-09 65.5 63 60.3
Gorai.001G274600 Gossypium raimondii HOM05D002315 ORTHO05D002416 4.9e-09 65.1 66 50.0
Lalb_Chr22g0360161 Lupinus albus HOM05D002315 ORTHO05D002416 4.9e-09 65.1 62 58.1
PSO017G4105 Papaver somniferum HOM05D002315 ORTHO05D002416 4.9e-09 65.1 65 53.8
PSO478G0649 Papaver somniferum HOM05D002315 ORTHO05D002416 4.9e-09 65.1 65 53.8
PGR102G2264 Punica granatum HOM05D002315 ORTHO05D002416 4.9e-09 65.1 77 58.4
Hund17435 Selenicereus undatus HOM05D002315 ORTHO05D002416 6.4e-09 64.7 114 39.5
Hund25489 Selenicereus undatus HOM05D002315 ORTHO05D002416 6.4e-09 64.7 67 61.2
Aqoxy3G01699 Aquilegia oxysepala HOM05D002315 ORTHO05D002416 8.4e-09 64.3 67 55.2
Lsat_1_v5_gn_2_94701 Lactuca sativa HOM05D002315 ORTHO05D002416 8.4e-09 64.3 63 55.6
CDE05G2420 Ceratophyllum demersum HOM05D002315 ORTHO05D002416 1.1e-08 63.9 62 51.6
Solyc02g094400.4 Solanum lycopersicum HOM05D002315 ORTHO05D002416 1.1e-08 63.9 62 54.8
Ah.03g148300 Amaranthus hybridus HOM05D002315 ORTHO05D002416 1.4e-08 63.5 64 53.1
Eucgr.B03536 Eucalyptus grandis HOM05D002315 ORTHO05D002416 1.4e-08 63.5 66 56.1
Sopen02g039050 Solanum pennellii HOM05D002315 ORTHO05D002416 1.4e-08 63.5 62 54.8
EL10Ac6g13565 Beta vulgaris HOM05D002315 ORTHO05D002416 3.2e-08 62.4 65 53.8
AUR62029437 Chenopodium quinoa HOM05D002315 ORTHO05D002416 3.2e-08 62.4 63 58.7
HanXRQChr15g0474781 Helianthus annuus HOM05D002315 ORTHO05D002416 5.4e-08 61.6 59 50.8
HanXRQChr17g0551591 Helianthus annuus HOM05D002315 ORTHO05D002416 5.4e-08 61.6 64 53.1
AL3G10050 Arabidopsis lyrata HOM05D002315 ORTHO05D002416 7.1e-08 61.2 63 52.4
Carub.0003s0005 Capsella rubella HOM05D002315 ORTHO05D002416 7.1e-08 61.2 63 52.4
Sc07g0003590 Simmondsia chinensis HOM05D002315 ORTHO05D002416 7.1e-08 61.2 64 53.1
AT3G02040 Arabidopsis thaliana HOM05D002315 ORTHO05D002416 1.2e-07 60.5 63 50.8
Lsat_1_v5_gn_0_11501 Lactuca sativa HOM05D002315 ORTHO05D002416 1.2e-07 60.5 67 56.7
Lalb_Chr10g0094481 Lupinus albus HOM05D002315 ORTHO05D002416 1.2e-07 60.5 67 52.2
A09p20300 Brassica napus HOM05D002315 ORTHO05D002416 2.7e-07 59.3 43 65.1
Peaxi162Scf00962g00002 Petunia axillaris HOM05D002315 ORTHO05D002416 2.7e-07 59.3 68 47.1
A02p27730 Brassica napus HOM05D002315 ORTHO05D002416 3.5e-07 58.9 46 63.0
BcaB07g30586 Brassica carinata HOM05D002315 ORTHO05D002416 4.6e-07 58.5 43 65.1
BraA02t07813Z Brassica rapa HOM05D002315 ORTHO05D002416 6.0e-07 58.2 43 65.1
BcaB07g31018 Brassica carinata HOM05D002315 ORTHO05D002416 7.9e-07 57.8 43 65.1
CARHR180430 Cardamine hirsuta HOM05D002315 ORTHO05D002416 1.0e-06 57.4 46 63.0
Lalb_Chr10g0094461 Lupinus albus HOM05D002315 ORTHO05D002416 1.0e-06 57.4 62 54.8
BcaC03g16571 Brassica carinata HOM05D002315 ORTHO05D002416 1.3e-06 57.0 43 62.8
C02p43830 Brassica napus HOM05D002315 ORTHO05D002416 1.3e-06 57.0 43 62.8
C02p54930 Brassica napus HOM05D002315 ORTHO05D002416 1.3e-06 57.0 43 62.8
BolC2t10431H Brassica oleracea HOM05D002315 ORTHO05D002416 1.3e-06 57.0 43 62.8
RcHm_v2.0_Chr4g0429471 Rosa chinensis HOM05D002315 ORTHO05D002416 1.7e-06 56.6 66 47.0
BraA09t37639Z Brassica rapa HOM05D002315 ORTHO05D002416 2.3e-06 56.2 43 65.1
Carub.0008s0536 Capsella rubella HOM05D002315 ORTHO05D002416 3.0e-06 55.8 49 61.2
ECA246G3915 Erigeron canadensis HOM05D002315 ORTHO05D002416 3.0e-06 55.8 59 52.5
Nitab4.5_0004291g0010 Nicotiana tabacum HOM05D002315 ORTHO05D002416 3.0e-06 55.8 65 53.8
HPP92_021687 Vanilla planifolia HOM05D002315 ORTHO05D002416 3.0e-06 55.8 64 50.0
Thhalv10003237m.g Eutrema salsugineum HOM05D002315 ORTHO05D002416 3.9e-06 55.5 46 58.7
Sed0022539 Sechium edule HOM05D002315 ORTHO05D002416 3.9e-06 55.5 62 48.4
Sc14g0009200 Simmondsia chinensis HOM05D002315 ORTHO05D002416 3.9e-06 55.5 62 50.0
Lalb_Chr10g0094331 Lupinus albus HOM05D002315 ORTHO05D002416 5.1e-06 55.1 62 54.8
Sp2g08110 Schrenkiella parvula HOM05D002315 ORTHO05D002416 5.1e-06 55.1 46 58.7
Hund06116 Selenicereus undatus HOM05D002315 ORTHO05D002416 5.1e-06 55.1 66 48.5
HPP92_021717 Vanilla planifolia HOM05D002315 ORTHO05D002416 5.1e-06 55.1 61 50.8
THA.LOC104825641 Tarenaya hassleriana HOM05D002315 ORTHO05D002416 6.6e-06 54.7 62 43.5


User provided reference genes

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