Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.5e-172 609.4 304 100.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.0e-160 568.5 304 92.1
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 2.0e-156 555.8 304 90.5
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.7e-155 552.7 304 90.1
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.9e-154 549.3 304 89.5
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.1e-145 519.2 304 84.5
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.0e-144 515.4 304 84.2
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.5e-143 513.1 269 93.3
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 5.7e-143 511.1 305 84.6
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.8e-142 508.8 326 78.8
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.1e-141 506.9 308 83.4
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.4e-141 505.8 304 83.2
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.3e-139 500.0 306 82.0
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.4e-138 496.5 305 81.3
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 3.2e-138 495.4 282 85.8
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 4.7e-137 491.5 304 78.9
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.3e-136 489.2 304 80.3
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 8.8e-136 487.3 304 78.3
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 2.6e-135 485.7 304 80.6
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.6e-135 485.7 310 79.0
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 4.4e-135 485.0 305 79.7
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.4e-133 479.2 304 77.0
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 4.1e-133 478.4 303 78.2
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 2.0e-132 476.1 304 77.6
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 5.9e-132 474.6 304 77.0
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 5.9e-132 474.6 269 87.4
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 7.7e-132 474.2 304 76.6
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.7e-131 473.0 306 76.1
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 2.2e-131 472.6 305 76.7
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 5.0e-131 471.5 305 75.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.5e-130 469.9 304 77.3
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.9e-130 469.5 305 76.7
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.5e-130 469.2 304 77.0
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 3.2e-130 468.8 307 77.5
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 7.2e-130 467.6 304 77.0
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.6e-129 466.5 322 74.2
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.7e-129 465.7 305 76.1
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.4e-128 463.4 358 69.6
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.8e-128 463.0 304 76.0
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 3.0e-128 462.2 304 75.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 6.7e-128 461.1 300 76.3
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.5e-127 459.9 277 83.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.0e-127 459.5 342 71.1
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 4.4e-127 458.4 291 79.4
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 5.7e-127 458.0 304 75.3
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 7.4e-127 457.6 306 74.5
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-126 456.1 300 75.7
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.7e-126 455.3 297 75.1
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.7e-126 455.3 297 77.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 4.8e-126 454.9 312 73.4
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 8.2e-126 454.1 304 75.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.8e-125 453.0 304 74.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 2.4e-125 452.6 304 74.7
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 2.4e-125 452.6 304 73.7
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 7.0e-125 451.1 302 74.2
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.0e-124 449.5 309 71.8
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 3.5e-124 448.7 308 74.4
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 3.5e-124 448.7 316 72.5
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 4.5e-124 448.4 312 71.8
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 5.9e-124 448.0 304 72.7
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 1.0e-123 447.2 296 75.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.7e-123 446.4 293 75.4
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 2.2e-123 446.0 303 72.9
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 2.2e-123 446.0 304 72.4
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 3.8e-123 445.3 285 76.1
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 3.8e-123 445.3 303 72.6
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.1e-122 443.7 303 72.9
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 3.2e-122 442.2 308 71.4
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.5e-122 441.4 248 88.7
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 7.2e-122 441.0 298 77.5
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 3.6e-121 438.7 269 79.9
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 4.7e-121 438.3 305 71.8
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.0e-120 437.2 317 69.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.4e-120 436.8 303 72.6
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.8e-120 436.4 314 72.3
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.3e-120 436.0 303 71.3
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 5.2e-120 434.9 292 72.9
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-117 426.8 304 70.7
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 4.1e-117 425.2 305 70.2
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.3e-117 424.9 300 70.7
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 1.6e-116 423.3 280 73.2
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 7.7e-116 421.0 304 70.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 3.8e-115 418.7 304 69.4
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.0e-115 418.3 285 71.9
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.5e-114 416.8 304 68.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 9.4e-114 414.1 304 67.4
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.1e-113 412.9 286 75.9
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 2.6e-111 406.0 282 72.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 4.4e-111 405.2 329 64.4
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-110 403.7 304 68.4
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.7e-110 402.1 280 69.3
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 8.3e-110 401.0 329 64.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.7e-108 396.0 261 72.0
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.2e-106 388.7 279 70.3
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 9.5e-106 387.5 329 63.2
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 2.0e-103 379.8 282 66.3
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 9.8e-103 377.5 289 66.1
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 6.3e-102 374.8 264 72.7
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.4e-101 372.9 257 74.7
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 4.1e-101 372.1 263 71.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 9.2e-101 370.9 259 71.0
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.2e-100 370.5 263 68.1
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.0e-99 367.5 279 67.4
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 8.6e-99 364.4 263 71.1
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.9e-98 363.2 251 71.7
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.8e-96 356.7 259 69.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 9.8e-95 350.9 273 63.0
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.9e-94 348.6 306 64.7
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 4.9e-94 348.6 261 66.3
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 4.1e-93 345.5 249 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.7e-92 342.8 249 66.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 2.3e-91 339.7 217 76.0
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 9.5e-90 334.3 215 76.7
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.8e-89 332.8 249 65.9
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 5.8e-87 325.1 203 78.8
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.7e-86 323.6 271 60.1
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.4e-85 319.7 270 61.1
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 4.6e-84 315.5 222 68.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.1e-80 302.8 249 61.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.7e-73 278.9 219 65.3
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.7e-62 243.8 303 47.2
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 3.8e-62 242.7 300 44.3
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.7e-60 236.5 248 52.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.0e-51 208.0 121 84.3
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 5.1e-51 205.7 158 67.1
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 7.4e-50 201.8 122 81.1
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.6e-47 193.4 122 79.5
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 4.9e-46 189.1 271 40.6
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 3.2e-45 186.4 265 40.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 4.5e-39 166.0 118 69.5
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 2.5e-37 160.2 86 87.2
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-36 156.0 144 61.8
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-31 140.6 83 78.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.1e-27 125.9 91 69.2
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.1e-26 124.8 109 60.6
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 2.0e-23 114.0 287 28.9
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 5.0e-22 109.4 75 69.3
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 9.4e-21 105.1 153 41.2
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 2.7e-20 103.6 290 31.4
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 8.8e-19 98.6 316 26.9
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 9.7e-18 95.1 109 48.6
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 2.2e-17 94.0 61 68.9
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.8e-17 93.6 238 29.4
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 5.9e-15 85.9 207 27.5
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 7.7e-15 85.5 81 56.8
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.8e-14 83.2 51 70.6
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 6.5e-14 82.4 55 67.3
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 4.7e-12 76.3 49 69.4
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 8.0e-12 75.5 47 70.2
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 6.7e-11 72.4 311 25.1
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 8.8e-11 72.0 311 25.1
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 5.7e-10 69.3 41 75.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.8e-08 64.3 39 71.8
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 3.1e-08 63.5 233 23.6
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-07 61.6 79 45.6


User provided reference genes

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