Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 2.2e-140 502.3 252 100.0
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 3.5e-122 441.8 283 82.0
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 2.8e-119 432.2 283 79.5
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 3.1e-118 428.7 283 78.8
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.4e-115 419.1 283 77.4
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 2.4e-115 419.1 283 77.4
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 5.4e-115 417.9 283 76.0
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 9.2e-115 417.2 283 75.6
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.7e-114 415.6 283 75.3
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.0e-113 413.7 283 75.6
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 2.3e-113 412.5 283 74.9
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 3.9e-113 411.8 283 74.2
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 3.9e-113 411.8 283 75.3
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 6.6e-113 411.0 283 74.6
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 6.6e-113 411.0 283 74.6
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 1.1e-112 410.2 283 73.9
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.9e-112 409.5 283 74.9
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 2.5e-112 409.1 283 74.2
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.3e-112 408.3 283 76.0
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 5.6e-112 407.9 282 74.8
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 7.3e-112 407.5 283 74.6
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.2e-111 406.8 283 74.6
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.6e-111 406.4 283 73.9
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 1.6e-111 406.4 283 72.8
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 2.1e-111 406.0 283 73.5
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 4.7e-111 404.8 283 74.2
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.4e-110 403.3 283 72.8
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 1.4e-110 403.3 283 74.2
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 1.8e-110 402.9 283 72.8
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 4.0e-110 401.7 284 72.9
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 4.0e-110 401.7 283 72.4
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 5.3e-110 401.4 283 72.8
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 9.0e-110 400.6 283 72.4
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 2.0e-109 399.4 283 73.5
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 3.4e-109 398.7 286 73.8
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 3.4e-109 398.7 282 72.3
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 5.8e-109 397.9 283 72.8
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 5.8e-109 397.9 283 72.8
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 9.9e-109 397.1 284 72.9
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 4.9e-108 394.8 283 71.7
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 4.9e-108 394.8 283 72.4
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 4.9e-108 394.8 283 74.2
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 8.4e-108 394.0 283 71.7
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 8.4e-108 394.0 284 72.2
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.4e-107 393.3 283 70.3
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 2.4e-107 392.5 283 72.1
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 2.4e-107 392.5 279 74.2
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 2.4e-107 392.5 284 73.6
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.4e-107 392.5 284 71.8
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 3.2e-107 392.1 283 71.0
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 4.2e-107 391.7 283 72.1
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 7.1e-107 391.0 284 71.5
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 7.1e-107 391.0 281 72.6
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 9.3e-107 390.6 284 71.8
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 1.2e-106 390.2 284 72.9
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.2e-106 390.2 284 73.9
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 1.2e-106 390.2 279 72.8
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 1.6e-106 389.8 284 71.8
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.6e-106 389.8 284 71.8
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.6e-106 389.8 283 71.0
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 2.1e-106 389.4 276 74.6
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 2.1e-106 389.4 275 73.5
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 3.5e-106 388.7 284 73.9
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 4.6e-106 388.3 283 73.1
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 6.0e-106 387.9 284 71.5
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 6.0e-106 387.9 284 73.2
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 7.8e-106 387.5 284 73.2
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 7.8e-106 387.5 284 72.9
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 1.0e-105 387.1 284 73.2
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 1.7e-105 386.3 282 71.6
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 3.0e-105 385.6 283 72.1
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 5.1e-105 384.8 280 70.0
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 6.6e-105 384.4 284 71.5
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 1.1e-104 383.6 283 71.0
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 1.5e-104 383.3 284 70.8
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 1.5e-104 383.3 281 71.2
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 1.5e-104 383.3 284 71.8
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.9e-104 382.9 284 73.6
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 2.5e-104 382.5 282 70.6
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 2.5e-104 382.5 321 65.1
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 4.3e-104 381.7 283 69.3
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 4.3e-104 381.7 280 72.1
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 4.3e-104 381.7 284 72.2
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 5.6e-104 381.3 284 72.9
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 1.6e-103 379.8 284 69.4
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 3.6e-103 378.6 283 71.0
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 3.6e-103 378.6 283 71.0
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 3.6e-103 378.6 284 70.8
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 6.2e-103 377.9 284 70.4
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 8.1e-103 377.5 284 70.8
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 8.1e-103 377.5 283 69.6
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 1.4e-102 376.7 284 70.1
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 1.4e-102 376.7 284 70.8
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 2.4e-102 375.9 283 70.3
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 6.9e-102 374.4 284 68.7
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 1.5e-101 373.2 284 68.7
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.0e-101 372.9 283 66.8
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 2.0e-101 372.9 284 69.0
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 2.6e-101 372.5 282 69.5
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 5.8e-101 371.3 284 70.1
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 5.8e-101 371.3 284 69.4
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 7.6e-101 370.9 283 68.6
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 1.7e-100 369.8 283 68.9
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 6.4e-100 367.9 283 68.2
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 6.4e-100 367.9 283 68.6
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 4.2e-99 365.2 283 68.6
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 5.4e-99 364.8 281 66.2
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 5.4e-99 364.8 283 68.6
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 7.1e-99 364.4 284 68.3
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 1.2e-98 363.6 283 67.8
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 1.6e-98 363.2 283 67.8
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 1.6e-98 363.2 283 67.8
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 1.6e-98 363.2 283 68.2
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 2.7e-98 362.5 283 67.5
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 3.5e-98 362.1 283 67.8
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 3.5e-98 362.1 279 68.5
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 4.6e-98 361.7 278 68.7
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 7.9e-98 360.9 283 67.8
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 1.3e-97 360.1 283 67.8
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 1.8e-97 359.8 299 66.2
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 3.9e-97 358.6 283 67.8
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 3.9e-97 358.6 293 65.9
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.7e-97 357.8 272 68.0
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 8.7e-97 357.5 283 66.8
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.1e-96 357.1 259 71.0
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 2.5e-96 355.9 319 60.8
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 9.6e-96 354.0 337 59.3
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.6e-95 353.2 326 59.8
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 2.1e-95 352.8 284 65.5
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 2.8e-95 352.4 287 65.9
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 2.8e-95 352.4 284 67.3
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 5.5e-91 338.2 286 65.4
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 9.3e-91 337.4 283 64.0
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 5.1e-89 331.6 282 65.2
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 2.1e-87 326.2 306 59.5
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 9.0e-86 320.9 229 73.8
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 2.0e-85 319.7 253 68.8
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 1.3e-84 317.0 275 61.8
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 3.2e-83 312.4 275 61.8
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 4.5e-77 292.0 281 55.9
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 1.1e-75 287.3 280 53.2
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 4.6e-74 282.0 284 52.1
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.7e-71 272.3 284 52.1
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 4.8e-71 271.9 284 53.5
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 4.2e-67 258.8 281 50.2
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 3.5e-61 239.2 303 45.5
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 8.5e-60 234.6 209 62.7
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 4.7e-58 228.8 275 46.9
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 2.2e-52 209.9 235 48.5
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 2.9e-52 209.5 126 77.8
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 2.9e-52 209.5 280 45.7
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 7.2e-51 204.9 168 67.3
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 4.7e-50 202.2 118 78.8
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 1.0e-49 201.1 120 86.7
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 4.0e-49 199.1 120 84.2
MD09G1275000 Malus domestica HOM05D003564 ORTHO05D024794 7.5e-48 194.9 123 75.6
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 1.7e-47 193.7 120 81.7
CAN.G311.69 Capsicum annuum HOM05D003564 ORTHO05D005332 4.4e-40 169.1 102 83.3
Sopen01g020110 Solanum pennellii HOM05D003564 ORTHO05D015539 2.0e-37 160.2 92 87.0
CAN.G311.68 Capsicum annuum HOM05D003564 ORTHO05D024794 2.6e-32 143.3 94 72.3
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 2.1e-26 123.6 69 91.3
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 8.0e-26 121.7 65 95.4
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 4.0e-25 119.4 276 31.5
PSO761G0547 Papaver somniferum HOM05D003564 ORTHO05D005332 5.2e-25 119.0 70 87.1
CSS0033456 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 2.9e-23 113.2 65 87.7
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 1.9e-22 110.5 61 90.2
Lsat_1_v5_gn_1_7420 Lactuca sativa HOM05D003564 ORTHO05D001424 1.6e-21 107.5 63 84.1
Lsat_1_v5_gn_2_75340 Lactuca sativa HOM05D003564 ORTHO05D015539 2.0e-21 107.1 63 84.1
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 2.7e-21 106.7 119 52.9
PSO673G0028 Papaver somniferum HOM05D003564 ORTHO05D015539 1.3e-20 104.4 69 76.8
RcHm_v2.0_Chr2g0091411 Rosa chinensis HOM05D003564 ORTHO05D024794 3.9e-20 102.8 79 62.0
Hma1.2p1_0760F.1_g214160 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 3.3e-19 99.8 59 81.4
Hma1.2p1_0014F.1_g009450 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 9.5e-19 98.2 59 79.7
Hma1.2p1_0213F.1_g090610 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.2e-18 97.8 59 79.7
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 1.1e-17 94.7 65 78.5
CAN.G170.129 Capsicum annuum HOM05D000030 ORTHO05D000031 5.8e-16 89.0 112 45.5
RcHm_v2.0_Chr4g0385481 Rosa chinensis HOM05D003564 ORTHO05D024794 9.8e-16 88.2 78 59.0
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 2.2e-15 87.0 124 46.8
HanXRQChr14g0435401 Helianthus annuus HOM05D003564 ORTHO05D015539 1.7e-12 77.4 60 68.3
Lsat_1_v5_gn_8_109520 Lactuca sativa HOM05D003564 ORTHO05D232393 7.3e-11 72.0 67 55.2
Lsat_1_v5_gn_5_163121 Lactuca sativa HOM05D003564 ORTHO05D230188 1.2e-10 71.2 49 71.4
SGA_v2.0_scaffold18G08519 Striga asiatica HOM05D030373 ORTHO05D030073 4.1e-06 56.2 38 71.1


User provided reference genes

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