Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 0.0e+00 1232.2 679 100.0
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.3e-272 943.0 691 79.2
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 7.0e-226 787.7 613 74.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 5.2e-213 745.0 693 67.0
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 2.0e-212 743.0 692 67.1
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.9e-211 739.2 698 62.9
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.5e-204 716.8 694 64.8
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 3.6e-153 546.2 738 52.7
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 2.5e-151 540.0 728 49.2
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 6.9e-149 531.9 549 59.2
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 4.2e-146 522.7 738 52.4
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 3.6e-137 493.0 716 51.0
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 6.7e-136 488.8 691 50.2
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 7.4e-135 485.3 704 49.9
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.3e-134 484.6 744 49.6
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.8e-134 483.4 740 49.6
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.4e-133 481.1 729 45.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 7.7e-132 475.3 794 44.7
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.9e-131 473.4 816 45.6
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.5e-130 471.1 742 48.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 2.8e-126 456.8 501 54.9
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 6.5e-123 445.7 776 44.1
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.5e-122 444.5 790 43.4
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 2.3e-120 437.2 745 43.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.3e-118 429.1 727 42.5
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.1e-117 428.3 787 41.9
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.5e-116 423.3 444 54.1
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 2.5e-114 417.2 687 48.0
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.5e-111 407.9 714 44.8
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.5e-111 407.9 714 44.8
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 8.3e-110 402.1 707 39.3
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.2e-109 400.2 762 44.4
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 4.1e-109 399.8 768 43.4
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 9.2e-109 398.7 716 43.2
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 8.6e-107 392.1 747 42.3
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.3e-106 389.8 748 43.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.3e-106 389.0 766 42.6
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.7e-105 386.3 764 43.6
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.8e-104 384.4 762 43.6
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 4.0e-96 356.7 465 48.4
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 9.8e-95 352.1 497 46.3
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 4.9e-94 349.7 846 35.9
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 7.8e-92 342.4 424 48.8
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.9e-90 337.8 718 36.5
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.6e-89 333.6 445 48.1
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 8.9e-88 328.9 438 48.6
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 3.4e-87 327.0 704 41.6
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 9.9e-87 325.5 763 41.7
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 4.9e-86 323.2 425 45.4
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 4.9e-86 323.2 438 47.0
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.9e-85 321.2 451 46.3
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 2.7e-84 317.4 691 36.2
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 7.8e-84 315.8 420 47.1
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 5.1e-83 313.2 425 46.1
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.1e-83 313.2 516 44.6
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.6e-83 312.8 680 37.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 5.6e-82 309.7 681 37.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 7.3e-82 309.3 767 33.6
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 7.3e-82 309.3 724 35.9
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 3.6e-81 307.0 601 39.8
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 8.1e-81 305.8 417 46.3
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 5.2e-80 303.1 432 46.1
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.7e-78 298.1 661 42.4
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.9e-78 296.6 718 34.5
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.9e-77 294.7 353 49.6
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.4e-77 294.3 739 40.1
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 2.4e-77 294.3 508 40.9
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 4.2e-77 293.5 488 49.8
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 2.7e-76 290.8 438 46.1
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 7.8e-76 289.3 742 40.4
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.0e-75 288.9 709 40.1
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 1.3e-75 288.5 454 43.6
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 3.9e-75 287.0 423 46.3
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 5.1e-75 286.6 429 45.9
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.1e-74 285.4 775 33.8
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 9.6e-74 282.3 775 37.3
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.6e-73 281.6 642 36.0
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 2.8e-73 280.8 536 40.3
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.6e-73 280.4 441 44.2
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.1e-72 278.9 452 44.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 5.3e-72 276.6 487 41.3
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.2e-71 275.4 384 46.9
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 9.9e-71 272.3 421 43.7
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 9.9e-71 272.3 487 42.5
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 2.9e-70 270.8 420 43.6
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.9e-70 270.0 430 44.9
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 4.2e-69 266.9 436 44.5
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.4e-69 266.5 435 44.4
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 1.6e-68 265.0 809 34.7
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-68 265.0 715 39.6
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.1e-68 264.6 433 45.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 6.0e-68 263.1 490 39.0
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.7e-67 261.5 740 38.1
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 6.6e-67 259.6 492 46.3
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 6.6e-67 259.6 495 45.5
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.5e-66 258.5 680 39.7
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.5e-66 258.5 351 47.0
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 5.6e-66 256.5 432 44.4
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.8e-65 254.2 200 65.5
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 4.8e-65 253.4 469 46.3
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 4.8e-65 253.4 469 46.3
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 8.1e-65 252.7 434 44.0
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.4e-64 251.9 435 42.3
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.8e-64 251.5 623 39.8
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.8e-64 251.5 643 40.1
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.8e-64 251.5 200 66.0
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 9.9e-63 245.7 490 39.2
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.7e-62 245.0 645 38.0
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.7e-62 245.0 453 39.7
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 3.8e-62 243.8 226 59.3
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.1e-61 242.3 378 45.2
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 9.3e-61 239.2 423 41.1
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 4.6e-60 236.9 424 40.1
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.8e-59 235.0 360 47.5
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 2.5e-58 231.1 198 61.6
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 3.1e-56 224.2 469 37.7
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 3.8e-54 217.2 396 41.7
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 4.9e-54 216.9 455 38.7
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.9e-53 214.9 165 64.8
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.6e-52 211.8 169 65.1
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 6.0e-52 209.9 361 39.3
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.3e-51 208.0 228 48.2
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 5.1e-51 206.8 465 35.9
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 6.7e-51 206.5 371 39.1
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 2.5e-50 204.5 465 35.9
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 9.6e-50 202.6 240 48.8
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 9.6e-50 202.6 166 59.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.3e-49 202.2 500 36.6
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.1e-48 197.6 151 62.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 4.1e-48 197.2 421 39.0
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.9e-46 191.0 478 37.0
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 5.1e-43 180.3 188 49.5
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 3.1e-40 171.0 238 44.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 9.0e-40 169.5 174 51.1
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 5.9e-39 166.8 136 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.1e-37 162.5 170 51.2
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.6e-36 157.1 177 48.6
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.3e-35 154.8 330 37.6
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.7e-33 148.7 151 51.0
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 1.8e-32 145.2 160 49.4
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.0e-31 141.7 136 53.7
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.8e-25 121.3 364 39.0
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 4.1e-24 117.5 97 63.9
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 9.1e-24 116.3 87 65.5
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 9.1e-16 89.7 64 62.5
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.7e-14 85.5 71 59.2
Hma1.2p1_1100F.1_g257070 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.0e-14 84.0 115 42.6
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 2.7e-12 78.2 170 31.8
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.0e-10 72.0 119 31.9
Dinv01388 Davidia involucrata HOM05D033017 ORTHO05D005266 5.4e-08 63.9 156 34.6
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.9e-06 58.2 57 47.4


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