Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1966.0 988 100.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1859.0 986 94.1
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1844.3 988 92.5
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1842.4 988 92.2
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1839.7 988 92.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1797.7 988 89.9
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1787.3 988 89.5
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1772.3 989 88.6
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1771.1 988 88.4
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1763.4 989 88.2
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1761.5 988 88.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1760.0 988 88.3
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1755.3 989 88.1
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1755.3 984 88.2
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1754.2 988 88.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1751.5 988 90.0
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1751.1 988 87.2
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1751.1 985 88.1
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1749.2 988 88.2
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1748.0 988 87.8
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1744.6 989 87.7
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1741.1 989 87.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1733.4 1012 85.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1732.2 989 86.7
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1731.8 1012 85.5
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1728.8 988 86.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1726.1 988 86.4
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1724.9 989 86.6
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1722.2 998 85.4
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1717.2 989 86.0
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1715.3 1012 84.8
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 1015 84.0
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1702.6 989 85.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1700.3 1083 79.1
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1697.9 997 84.6
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1695.2 988 84.0
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1692.6 988 83.9
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1691.8 988 85.0
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1691.4 990 84.9
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1690.6 1029 82.7
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 989 83.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1685.2 988 84.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1684.5 990 84.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 989 83.6
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 989 84.7
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1682.5 993 84.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1681.0 990 83.6
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1680.6 991 83.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1680.6 986 83.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 989 85.2
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1677.9 990 83.7
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1676.8 996 83.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1675.2 989 83.3
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1674.1 985 83.4
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1671.8 984 83.7
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1669.4 1005 83.1
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1668.3 1001 82.2
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1667.9 1077 78.9
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1666.0 988 83.2
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1665.6 990 82.5
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1664.4 989 82.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1663.7 991 82.7
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 991 83.2
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 989 82.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1662.1 987 83.8
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1660.6 1004 81.7
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1656.7 991 83.4
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1653.3 994 82.3
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 1004 81.6
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1649.4 989 82.8
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1647.5 997 82.4
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1644.8 1006 81.1
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1644.4 991 82.6
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1643.2 989 81.9
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1631.7 933 86.6
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1624.4 986 81.6
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1617.1 989 81.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1611.7 1025 79.8
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 982 80.9
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1605.9 937 85.3
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1605.5 989 80.2
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1604.0 1039 77.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1595.9 989 80.0
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1590.5 1017 78.6
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1570.4 928 85.1
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1567.4 986 78.8
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1550.4 979 77.5
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1520.4 989 77.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1504.6 989 76.4
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1482.2 896 81.5
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1471.8 848 85.4
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1463.0 985 73.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1438.3 817 87.8
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1437.9 994 72.8
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1394.0 792 87.4
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1392.1 785 87.8
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1360.1 793 86.1
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1351.7 771 86.5
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1351.3 856 79.6
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1348.6 995 71.9
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1342.0 952 72.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1338.6 792 84.2
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1318.5 762 86.0
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1293.9 760 84.3
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1206.8 782 79.0
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1197.2 992 60.5
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1193.7 1003 60.6
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1177.5 761 79.0
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 8.7e-302 1040.4 643 82.3
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 6.5e-297 1024.2 987 52.7
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.5e-296 1021.1 611 82.7
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.0e-294 1015.4 555 90.6
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.2e-292 1009.2 790 63.4
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 7.9e-287 990.7 665 75.0
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 8.3e-260 901.0 574 78.6
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 2.7e-258 896.0 519 85.2
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.2e-253 880.6 611 70.9
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.1e-248 864.0 517 83.2
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 8.7e-209 731.5 418 84.9
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.1e-174 618.2 336 90.5
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-158 565.1 336 82.4
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.6e-146 523.5 282 90.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 5.2e-121 439.9 1069 30.5
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 7.1e-118 429.5 249 85.5
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 4.6e-109 400.2 1002 29.2
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 7.8e-109 399.4 230 82.2
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.1e-105 389.0 231 79.7
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 5.4e-102 376.7 268 72.8
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 5.4e-102 376.7 1265 26.8
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 4.3e-99 367.1 204 87.7
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 4.5e-96 357.1 207 82.1
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.8e-92 345.1 231 73.2
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 4.6e-85 320.5 178 86.0
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 6.2e-82 310.1 198 78.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 5.5e-78 297.0 284 55.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 6.9e-73 280.0 211 67.8
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 4.5e-72 277.3 153 85.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 2.9e-71 274.6 441 38.5
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 5.5e-62 243.8 153 77.8
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 2.3e-60 238.4 127 85.8
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 4.7e-53 214.2 135 74.1
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.7e-47 195.7 120 76.7
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 2.6e-43 181.8 163 60.1
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.2e-39 168.7 174 59.2
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-36 158.3 129 61.2
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 5.2e-36 157.5 88 86.4
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.8e-36 157.1 106 70.8
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.2e-34 152.1 94 76.6
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.1e-30 139.8 73 95.9
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 2.5e-30 138.7 99 68.7
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 8.9e-28 130.2 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.5e-27 129.4 138 55.8
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.4e-27 128.3 75 81.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.3e-26 124.0 81 69.1
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.4e-25 122.1 92 67.4
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.4e-25 120.9 91 68.1
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 3.5e-24 118.2 75 76.0
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-22 112.5 80 80.0
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 3.7e-18 98.2 87 56.3
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.1e-17 96.7 52 84.6
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.0e-17 94.0 117 42.7
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 2.3e-15 89.0 100 50.0
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.0e-15 88.6 54 75.9
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 4.0e-12 78.2 160 35.6
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 6.8e-12 77.4 227 26.0
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.8e-12 77.4 48 64.6
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 3.9e-07 61.6 47 66.0
Actinidia13759 Actinidia chinensis HOM05D002694 ORTHO05D002927 1.5e-06 59.7 35 77.1
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 2.5e-06 58.9 45 62.2


User provided reference genes

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