Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 3.1e-93 345.1 173 100.0
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 9.2e-90 333.6 172 97.1
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 5.6e-87 324.3 172 93.0
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 2.1e-86 322.4 172 93.6
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 2.1e-86 322.4 172 93.6
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 6.2e-86 320.9 172 93.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 6.8e-85 317.4 172 91.9
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 2.0e-84 315.8 172 90.1
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 3.4e-84 315.1 173 91.9
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 9.9e-84 313.5 172 88.4
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.3e-83 313.2 173 91.3
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.7e-83 312.8 173 91.3
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 2.2e-83 312.4 172 89.0
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 2.2e-83 312.4 172 90.1
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.9e-83 312.0 173 90.8
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.9e-83 312.0 173 90.8
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.9e-83 312.0 173 90.8
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 2.9e-83 312.0 173 89.6
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 3.8e-83 311.6 173 89.6
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 3.8e-83 311.6 172 89.5
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 4.9e-83 311.2 173 90.8
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 4.9e-83 311.2 173 90.2
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 8.4e-83 310.5 173 89.6
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 8.4e-83 310.5 172 89.0
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 8.4e-83 310.5 173 90.2
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.1e-82 310.1 172 87.2
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.1e-82 310.1 172 87.2
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 1.9e-82 309.3 173 89.0
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.9e-82 309.3 173 89.0
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 2.4e-82 308.9 173 90.2
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 3.2e-82 308.5 173 90.2
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 3.2e-82 308.5 173 87.9
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 4.2e-82 308.1 173 89.0
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 5.4e-82 307.8 173 89.6
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 5.4e-82 307.8 173 89.6
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 5.4e-82 307.8 172 87.8
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 5.4e-82 307.8 173 90.2
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 7.1e-82 307.4 173 89.6
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 9.3e-82 307.0 173 88.4
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 9.3e-82 307.0 173 88.4
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 9.3e-82 307.0 172 87.2
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.6e-81 306.2 173 87.9
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.1e-81 305.8 173 89.6
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 2.7e-81 305.4 173 88.4
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 3.5e-81 305.1 173 88.4
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 3.5e-81 305.1 173 88.4
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 3.5e-81 305.1 173 87.9
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 4.6e-81 304.7 173 87.9
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 6.0e-81 304.3 172 86.6
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 7.8e-81 303.9 173 88.4
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 7.8e-81 303.9 173 87.9
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 1.0e-80 303.5 173 87.3
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.0e-80 303.5 172 89.0
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 1.3e-80 303.1 173 89.0
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.3e-80 303.1 173 86.1
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.3e-80 303.1 173 88.4
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.3e-80 303.1 173 88.4
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 1.7e-80 302.8 172 86.6
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 1.7e-80 302.8 173 87.3
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 2.3e-80 302.4 172 87.2
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 3.0e-80 302.0 173 87.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 3.9e-80 301.6 173 85.5
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 6.6e-80 300.8 172 86.6
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 6.6e-80 300.8 173 86.1
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 6.6e-80 300.8 173 86.1
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 8.7e-80 300.4 172 87.8
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 1.1e-79 300.1 173 86.1
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.5e-79 299.7 173 85.5
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.5e-79 299.7 173 85.0
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 1.9e-79 299.3 172 86.0
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 2.5e-79 298.9 173 85.0
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.3e-79 298.1 173 85.5
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 4.3e-79 298.1 173 87.3
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 7.3e-79 297.4 175 87.4
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 9.6e-79 297.0 173 85.5
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 9.6e-79 297.0 172 85.5
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 2.1e-78 295.8 173 84.4
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 2.8e-78 295.4 173 83.8
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 3.6e-78 295.0 173 87.9
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.8e-78 294.7 173 85.5
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 8.1e-78 293.9 173 85.0
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 8.1e-78 293.9 173 84.4
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 1.1e-77 293.5 173 85.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.4e-77 293.1 173 84.4
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.4e-77 292.4 171 86.5
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 2.4e-77 292.4 171 86.0
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 2.4e-77 292.4 171 86.0
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.4e-77 292.4 173 85.0
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 3.1e-77 292.0 173 85.5
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.1e-77 292.0 171 86.5
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 3.1e-77 292.0 173 85.0
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 6.9e-77 290.8 171 85.4
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 6.9e-77 290.8 171 85.4
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 6.9e-77 290.8 173 83.8
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 6.9e-77 290.8 173 83.2
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.2e-76 290.0 173 84.4
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.0e-76 289.3 171 85.4
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 2.0e-76 289.3 171 84.8
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 2.0e-76 289.3 171 85.4
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 2.0e-76 289.3 171 84.8
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 2.0e-76 289.3 171 85.4
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.0e-76 289.3 173 83.2
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 2.0e-76 289.3 171 84.2
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 4.4e-76 288.1 171 84.8
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 9.9e-76 287.0 172 83.7
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.3e-75 286.6 172 84.3
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 2.2e-75 285.8 172 80.8
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 6.4e-75 284.3 172 81.4
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 8.4e-75 283.9 172 83.1
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 7.1e-74 280.8 172 82.6
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.2e-73 280.0 174 79.3
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 2.1e-73 279.3 174 79.9
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 2.7e-73 278.9 173 82.1
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 3.5e-73 278.5 174 79.9
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 1.7e-72 276.2 172 82.0
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 3.9e-72 275.0 260 59.6
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 5.6e-71 271.2 212 68.9
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 2.1e-70 269.2 172 77.3
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 2.4e-69 265.8 172 76.7
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 7.6e-68 260.8 172 76.2
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.2e-67 259.2 172 76.2
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.3e-62 243.4 172 70.3
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 2.1e-54 216.1 170 68.2
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 9.0e-53 210.7 171 67.3
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 1.2e-52 210.3 190 55.3
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 6.7e-48 194.5 174 57.5
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 4.6e-41 171.8 172 54.1
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.0e-40 170.6 103 84.5
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 1.1e-37 160.6 104 76.9
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 2.2e-35 152.9 189 49.7
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 5.0e-27 125.2 142 54.2
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 5.5e-26 121.7 172 40.1
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 3.0e-24 115.9 174 40.2
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 7.5e-23 111.3 57 96.5
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 8.5e-19 97.8 185 35.1
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.4e-16 90.5 44 97.7
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 5.2e-16 88.6 44 97.7
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.2e-14 83.2 50 74.0
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 2.0e-12 76.6 61 67.2
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 1.8e-08 63.5 42 76.2
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 1.5e-07 60.5 31 77.4


User provided reference genes

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