Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 5.0e-260 900.6 455 100.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 9.7e-248 859.8 455 94.7
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 4.5e-245 850.9 455 93.4
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 8.5e-244 846.7 456 93.2
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 8.5e-244 846.7 456 93.2
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.1e-243 846.3 456 93.2
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 2.0e-232 808.9 456 89.3
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 2.9e-228 795.0 456 86.8
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 6.6e-228 793.9 455 86.4
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.9e-227 792.3 456 86.0
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.5e-227 792.0 458 86.9
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 7.3e-227 790.4 456 87.5
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 2.1e-226 788.9 464 86.6
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 8.0e-226 786.9 456 86.8
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 8.0e-226 786.9 451 87.6
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 1.0e-225 786.6 460 87.4
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 6.8e-225 783.9 455 84.6
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 8.9e-225 783.5 455 85.3
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 2.0e-224 782.3 456 86.2
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 2.6e-224 781.9 457 85.6
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 3.4e-224 781.6 454 87.2
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 4.4e-224 781.2 456 86.2
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 7.5e-224 780.4 464 84.3
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 1.3e-223 779.6 427 91.6
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.2e-223 778.9 456 86.2
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 4.9e-223 777.7 456 85.3
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 8.3e-223 776.9 455 84.6
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 1.1e-222 776.5 458 85.6
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 2.4e-222 775.4 455 85.3
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 2.4e-222 775.4 427 90.6
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 9.2e-222 773.5 458 85.2
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 1.2e-221 773.1 456 85.3
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 2.0e-221 772.3 456 84.0
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 2.7e-221 771.9 456 85.3
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 3.5e-221 771.5 461 82.9
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 5.9e-221 770.8 458 83.0
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.0e-220 770.0 458 83.0
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.3e-220 769.6 458 83.8
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 8.6e-220 766.9 456 84.6
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 8.6e-220 766.9 460 83.7
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 1.9e-219 765.8 444 86.0
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 3.3e-219 765.0 456 84.4
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 4.3e-219 764.6 455 84.6
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 9.5e-219 763.5 462 83.3
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.2e-218 763.1 456 84.4
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 2.8e-218 761.9 458 83.4
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 4.7e-218 761.1 437 87.4
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.4e-217 759.6 456 84.0
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 1.8e-217 759.2 456 83.6
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 2.3e-217 758.8 456 84.2
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 1.5e-216 756.1 461 83.1
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 1.5e-216 756.1 462 83.1
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 2.0e-216 755.7 457 83.2
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.6e-216 755.4 457 83.2
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.4e-216 755.0 457 83.2
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 7.5e-216 753.8 462 82.5
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 7.5e-216 753.8 464 81.7
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 9.8e-216 753.4 506 77.1
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 1.7e-215 752.7 462 82.5
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 2.2e-215 752.3 456 83.1
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.9e-215 751.9 462 82.5
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 4.9e-215 751.1 454 83.3
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 4.9e-215 751.1 434 86.2
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 6.4e-215 750.7 431 86.5
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 8.3e-215 750.4 425 87.5
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.1e-214 750.0 462 82.3
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 1.1e-214 750.0 457 82.5
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-214 749.6 456 82.9
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.9e-214 749.2 454 82.8
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 1.9e-214 749.2 460 83.9
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.2e-214 748.4 462 82.0
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 5.4e-214 747.7 463 81.0
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 1.6e-213 746.1 429 88.6
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 1.6e-213 746.1 429 88.6
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 3.5e-213 745.0 461 82.9
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 4.6e-213 744.6 465 81.1
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 6.0e-213 744.2 459 81.9
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 6.0e-213 744.2 459 81.9
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.7e-212 742.7 453 81.5
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 3.0e-212 741.9 459 81.9
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 3.0e-212 741.9 459 81.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 5.0e-212 741.1 449 82.4
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 8.6e-212 740.3 459 81.7
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 8.6e-212 740.3 459 81.7
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 1.1e-211 740.0 434 85.3
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 9.5e-211 736.9 478 79.1
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 8.1e-210 733.8 484 78.5
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 8.1e-210 733.8 500 76.8
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 2.3e-209 732.3 462 80.7
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 1.5e-208 729.6 422 86.5
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 4.4e-208 728.0 441 82.8
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 5.8e-208 727.6 420 86.2
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.7e-207 726.1 455 78.7
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 1.1e-206 723.4 432 81.5
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 5.1e-204 714.5 419 84.0
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 3.6e-202 708.4 419 82.8
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 4.0e-201 704.9 391 89.8
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 2.9e-199 698.7 480 75.2
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 6.4e-199 697.6 438 80.6
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 1.4e-198 696.4 457 80.1
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 1.7e-196 689.5 524 69.8
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 6.2e-194 681.0 397 86.4
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 6.9e-193 677.6 455 77.1
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 1.5e-192 676.4 459 76.0
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 2.0e-192 676.0 384 87.8
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 1.3e-191 673.3 425 79.3
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.8e-191 671.8 460 74.3
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.4e-190 669.8 384 86.7
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 2.1e-189 666.0 460 75.7
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 6.2e-186 654.4 419 78.3
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 1.2e-184 650.2 434 76.0
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 2.0e-184 649.4 413 78.7
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.3e-183 646.7 440 74.8
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 2.2e-175 619.4 413 75.8
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 3.8e-175 618.6 411 75.2
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.5e-173 612.1 408 73.5
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.5e-171 606.7 488 66.6
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.2e-168 597.0 464 65.7
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 3.9e-164 582.0 425 72.7
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.3e-156 556.2 587 55.5
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 6.1e-149 531.6 330 82.1
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 5.0e-143 511.9 427 59.0
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 2.7e-141 506.1 329 77.5
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 2.2e-127 459.9 411 57.7
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 3.6e-125 452.6 375 63.5
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 1.2e-120 437.6 368 60.6
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.9e-112 408.7 252 81.3
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.5e-110 404.1 275 73.8
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 1.0e-108 397.9 455 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 5.4e-105 385.6 425 51.3
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 4.1e-89 332.8 172 97.1
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 4.2e-81 306.2 279 59.5
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.7e-80 303.5 189 83.6
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 3.1e-76 290.0 386 42.2
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 9.9e-59 231.9 360 39.4
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 2.9e-58 230.3 136 80.1
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 9.7e-46 188.7 387 35.1
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 4.1e-44 183.3 117 80.3
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 1.1e-30 138.7 69 94.2
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 3.3e-30 137.1 83 79.5
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.7e-29 134.8 72 87.5
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 6.3e-29 132.9 81 87.7
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 5.7e-22 109.8 67 88.1
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 3.7e-21 107.1 103 59.2
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 1.1e-20 105.5 76 69.7
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 8.0e-16 89.4 59 79.7
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.8e-15 85.9 295 26.8
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 6.3e-13 79.7 61 70.5
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 5.0e-10 70.1 50 64.0
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 7.2e-09 66.2 74 47.3
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 1.8e-07 61.6 48 60.4
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 1.8e-07 61.6 48 60.4
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 1.8e-07 61.6 64 59.4
Cpa.g.c30355 Carica papaya HOM05D004870 ORTHO05D006061 2.3e-07 61.2 45 62.2


User provided reference genes

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