Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 3.9e-188 661.4 350 100.0
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 6.3e-162 574.3 342 89.5
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 3.9e-156 555.1 344 87.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.4e-145 520.0 297 92.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.0e-133 477.6 344 77.0
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.4e-132 476.9 340 76.8
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.8e-132 476.5 322 79.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.3e-122 443.7 341 71.8
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.8e-117 426.0 322 72.7
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.5e-115 420.2 337 70.0
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 9.8e-115 417.5 286 75.5
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-114 417.2 252 83.7
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.7e-114 416.8 284 76.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.2e-114 416.4 340 67.9
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-113 413.3 313 70.9
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.9e-113 413.3 287 77.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 3.2e-113 412.5 320 70.9
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.2e-113 412.5 347 68.3
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.1e-113 412.1 345 65.5
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 7.0e-113 411.4 333 67.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.6e-112 410.2 347 65.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.6e-112 410.2 254 81.9
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.1e-112 409.8 307 70.7
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 6.0e-112 408.3 255 81.2
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-111 407.1 339 67.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.7e-111 406.8 324 66.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.7e-111 406.8 293 73.4
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 5.0e-111 405.2 276 77.5
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 4.3e-110 402.1 363 65.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.3e-110 402.1 248 80.6
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 5.6e-110 401.7 251 80.5
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 7.3e-110 401.4 335 65.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.1e-109 399.8 349 66.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.8e-109 399.4 342 67.0
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.7e-109 398.7 351 66.4
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 8.1e-109 397.9 338 63.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.1e-108 397.5 256 76.6
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.4e-108 397.1 259 79.2
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.4e-108 397.1 250 79.6
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.8e-108 396.7 378 61.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.3e-108 396.4 278 75.2
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.3e-108 396.4 333 65.5
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.3e-108 396.4 335 65.1
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 3.1e-108 396.0 249 78.7
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.2e-108 395.2 252 79.4
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 8.9e-108 394.4 255 78.8
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 8.9e-108 394.4 252 79.4
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 8.9e-108 394.4 252 80.6
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 8.9e-108 394.4 285 73.7
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.5e-107 393.7 249 79.5
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 4.4e-107 392.1 340 64.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 4.4e-107 392.1 330 66.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 4.4e-107 392.1 330 64.8
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 7.5e-107 391.3 253 78.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.2e-106 389.8 253 76.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.2e-106 389.8 299 69.9
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 4.9e-106 388.7 304 69.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 8.3e-106 387.9 257 75.5
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 4.1e-105 385.6 317 66.2
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 7.1e-105 384.8 291 69.8
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.7e-104 382.9 249 77.1
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.7e-104 382.9 335 64.2
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.7e-104 382.9 334 62.9
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 6.0e-104 381.7 346 61.8
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 6.0e-104 381.7 337 64.1
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.9e-103 379.0 329 65.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 6.6e-103 378.3 283 70.7
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 7.3e-102 374.8 252 75.0
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.3e-102 374.8 304 66.4
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 9.5e-102 374.4 330 61.5
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-101 374.0 325 63.7
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-101 374.0 325 63.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.2e-101 374.0 308 65.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 2.1e-101 373.2 327 63.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.1e-101 373.2 342 63.2
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.8e-101 372.9 337 61.4
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 3.6e-101 372.5 312 65.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 4.7e-101 372.1 282 65.2
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 6.2e-101 371.7 319 65.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 8.1e-101 371.3 263 70.3
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.4e-100 370.5 276 68.1
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.4e-100 370.5 329 63.2
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.4e-100 369.8 319 64.9
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 5.2e-100 368.6 321 64.8
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 6.8e-100 368.2 249 72.3
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.2e-99 367.5 296 66.2
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 4.4e-99 365.5 251 72.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.8e-98 362.5 248 73.8
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.8e-98 362.5 325 62.2
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 4.9e-98 362.1 252 72.2
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.2e-96 357.5 290 66.2
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.1e-94 350.9 307 62.5
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.2e-89 332.4 251 67.3
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.6e-88 330.5 330 57.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.1e-88 330.1 251 66.5
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 2.7e-88 329.7 250 66.8
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.0e-87 326.2 245 66.9
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.6e-83 313.2 290 62.1
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.6e-83 313.2 305 57.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.6e-77 293.9 248 65.3
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 5.3e-76 288.9 203 70.0
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-75 287.7 268 60.1
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 6.2e-69 265.4 256 53.5
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.4e-68 264.2 301 45.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 9.0e-68 261.5 323 44.9
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-66 257.3 165 78.8
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.5e-58 228.8 187 67.4
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.1e-57 228.0 238 50.0
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 7.2e-57 225.3 142 78.2
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.8e-53 213.4 208 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.4e-52 210.3 228 50.4
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 2.3e-47 193.7 180 57.8
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-45 188.0 122 77.0
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 3.7e-45 186.4 219 51.1
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.2e-40 171.4 184 55.4
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.4e-39 167.9 163 58.3
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 8.8e-39 165.2 198 52.5
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.1e-38 164.9 188 53.7
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 5.7e-38 162.5 181 55.2
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.8e-37 160.2 110 75.5
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 2.7e-32 143.7 117 63.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.7e-32 143.7 96 77.1
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 7.5e-30 135.6 130 53.8
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-28 131.7 75 86.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.0e-26 125.2 101 62.4
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.7e-26 124.4 94 64.9
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 4.7e-24 116.3 151 49.7
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 6.1e-24 115.9 245 30.6
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 8.8e-23 112.1 82 68.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 8.8e-23 112.1 80 70.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.5e-22 111.3 83 68.7
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 2.9e-18 97.1 143 42.7
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 8.6e-18 95.5 92 58.7
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 3.6e-16 90.1 292 28.4
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 4.7e-16 89.7 50 84.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 6.1e-16 89.4 99 56.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.8e-15 87.8 56 76.8
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.3e-15 87.4 180 31.7
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.0e-15 87.0 147 38.1
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.5e-14 84.7 56 75.0
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.3e-13 79.3 284 28.2
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 4.1e-12 76.6 64 62.5
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 4.5e-11 73.2 58 69.0
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 8.6e-10 68.9 137 35.8
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.4e-07 61.6 73 43.8
COL.COLO4_28032 Corchorus olitorius HOM05D001335 ORTHO05D001184 1.5e-06 58.2 46 67.4


User provided reference genes

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