Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 0.0e+00 1089.7 561 100.0
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 3.8e-169 599.0 655 55.4
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.1e-155 554.3 623 53.8
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 8.6e-121 438.3 641 45.4
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 9.5e-120 434.9 641 45.1
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.6e-119 434.1 641 45.4
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 4.4e-117 426.0 589 47.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.1e-115 419.5 559 48.1
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 2.1e-114 417.2 562 47.7
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.7e-113 414.1 667 43.2
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 2.0e-109 400.6 570 45.1
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 2.4e-107 393.7 581 45.8
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.2e-106 391.3 563 45.3
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 3.5e-106 389.8 564 45.2
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 2.5e-104 383.6 510 48.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 9.6e-104 381.7 608 43.8
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 5.3e-102 375.9 606 42.7
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.5e-96 357.8 583 41.3
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 3.1e-94 350.1 576 41.7
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.3e-92 344.7 585 40.9
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 2.2e-92 344.0 572 41.8
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 5.3e-86 322.8 582 39.9
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 9.3e-83 312.0 504 43.1
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 6.0e-82 309.3 593 38.6
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 9.7e-80 302.0 614 36.2
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 4.1e-78 296.6 619 36.3
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.7e-76 291.2 295 53.2
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 1.1e-75 288.5 430 45.1
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 1.4e-75 288.1 572 38.3
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 6.1e-74 282.7 566 38.7
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.8e-73 281.2 557 38.4
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 8.7e-73 278.9 577 36.4
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.1e-72 278.5 576 36.1
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 4.3e-72 276.6 580 36.2
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 6.9e-70 269.2 507 39.4
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 3.4e-69 266.9 309 52.8
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.9e-67 261.2 590 35.8
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 4.6e-66 256.5 478 40.0
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.4e-65 255.0 560 37.3
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.9e-65 253.4 507 38.1
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 8.8e-65 252.3 650 36.0
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 6.3e-63 246.1 307 48.9
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 5.9e-61 239.6 495 37.0
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 7.7e-61 239.2 362 40.9
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 2.9e-60 237.3 465 39.6
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 1.4e-59 235.0 332 45.8
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 4.2e-59 233.4 583 36.9
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 7.2e-59 232.6 507 34.9
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 7.2e-59 232.6 304 45.1
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.7e-58 230.7 526 33.8
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 3.6e-58 230.3 582 35.4
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.3e-57 227.6 442 39.6
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.1e-56 225.3 522 38.7
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.5e-56 224.9 549 36.1
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 4.4e-56 223.4 438 39.0
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 4.4e-56 223.4 512 35.9
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 3.7e-55 220.3 211 57.3
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.4e-54 217.6 524 35.7
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 2.4e-54 217.6 294 43.9
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 4.1e-54 216.9 472 38.8
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.2e-53 215.3 255 49.8
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 5.9e-53 213.0 318 43.4
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 1.0e-52 212.2 569 33.7
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.7e-52 211.5 478 35.4
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.7e-52 211.5 298 44.6
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.2e-52 211.1 569 33.9
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 2.9e-52 210.7 308 45.5
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.9e-52 210.7 282 48.2
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.1e-51 208.8 333 43.8
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.9e-51 208.0 266 49.6
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 2.5e-51 207.6 328 44.2
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 3.2e-51 207.2 271 48.3
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 2.1e-50 204.5 454 37.4
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 4.7e-50 203.4 312 44.6
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.4e-49 201.8 319 43.3
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.3e-49 201.1 332 42.8
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 5.2e-49 199.9 251 48.6
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 1.2e-48 198.7 332 41.9
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 1.2e-48 198.7 332 41.9
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.5e-48 198.4 549 33.9
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.3e-48 197.2 541 34.0
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.7e-48 196.4 396 38.1
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.3e-47 195.3 276 47.1
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.7e-47 194.9 348 38.2
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 4.8e-47 193.4 336 42.0
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 6.3e-47 193.0 332 41.6
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 6.3e-47 193.0 332 41.6
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-46 192.2 276 46.4
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 1.8e-46 191.4 332 41.3
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 4.1e-46 190.3 547 33.1
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 5.3e-46 189.9 321 43.0
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.3e-46 189.9 321 43.0
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.0e-44 185.7 275 44.7
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.7e-44 184.9 586 31.6
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 7.2e-43 179.5 152 59.9
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.7e-42 177.6 198 52.5
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 4.7e-42 176.8 572 31.6
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 6.3e-39 166.4 179 52.5
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.2e-37 162.2 179 50.3
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 5.9e-37 159.8 548 29.0
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 5.0e-36 156.8 460 33.0
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.6e-34 151.8 217 44.2
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 6.1e-34 149.8 427 33.5
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 6.8e-33 146.4 346 38.2
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 1.5e-32 145.2 437 31.4
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.8e-30 138.3 221 38.5
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 7.0e-30 136.3 390 34.4
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.8e-29 132.9 193 42.0
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.0e-28 132.5 361 32.7
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.5e-27 127.9 212 38.7
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 1.2e-26 125.6 379 31.7
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.6e-26 124.0 386 30.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.6e-26 124.0 158 44.3
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 7.0e-22 109.8 172 40.7
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-21 107.1 239 36.4
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 6.0e-21 106.7 368 29.6
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 7.8e-21 106.3 172 38.4
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 6.6e-20 103.2 235 33.2
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 6.2e-18 96.7 117 45.3
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 2.3e-17 94.7 104 50.0
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 4.0e-17 94.0 176 39.2
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 3.4e-16 90.9 117 44.4
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.8e-16 90.1 122 46.7
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 1.4e-14 85.5 119 43.7
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 9.2e-14 82.8 145 36.6
Atru.chr5.3383 Acer truncatum HOM05D005442 ORTHO05D006450 1.2e-13 82.4 133 43.6
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.6e-13 82.0 222 28.8
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 6.0e-13 80.1 178 29.8
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 7.8e-13 79.7 171 32.2
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.3e-12 79.0 175 29.1
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.0e-12 77.0 226 28.8
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 2.5e-11 74.7 257 26.5
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 7.3e-11 73.2 175 29.1
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.6e-10 72.0 165 33.3
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 2.8e-10 71.2 82 46.3
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 3.6e-10 70.9 159 31.4
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 8.1e-10 69.7 59 54.2
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 1.1e-09 69.3 185 25.9
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 1.5e-08 65.5 42 71.4
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 4.4e-08 63.9 236 24.2
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 7.5e-08 63.2 216 26.4
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 7.5e-08 63.2 84 44.0
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.3e-07 62.4 221 24.0
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.3e-07 62.4 160 28.8
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.2e-07 61.6 147 27.2
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 2.9e-07 61.2 69 44.9
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 2.9e-07 61.2 225 25.3
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.9e-07 60.5 191 25.7
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.9e-07 60.5 191 25.7
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 4.9e-07 60.5 191 25.7
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 4.9e-07 60.5 193 24.9
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.4e-07 60.1 195 26.2
SEGI_20616 Sequoiadendron giganteum HOM05D042574 ORTHO05D384790 6.4e-07 60.1 113 38.9
SEGI_40313 Sequoiadendron giganteum HOM05D042574 ORTHO05D384823 6.4e-07 60.1 113 38.9
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 8.3e-07 59.7 181 24.3
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.1e-06 59.3 147 26.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.1e-06 59.3 143 29.4
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.1e-06 59.3 178 24.2
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 1.4e-06 58.9 234 23.9
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 1.4e-06 58.9 147 24.5
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.9e-06 58.5 216 23.6
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 2.4e-06 58.2 162 25.9
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 2.4e-06 58.2 163 25.2
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 3.2e-06 57.8 160 26.2
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 3.2e-06 57.8 192 25.0
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 3.2e-06 57.8 197 24.4
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 3.2e-06 57.8 147 27.9
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 4.1e-06 57.4 147 27.2
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 4.1e-06 57.4 153 26.1
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 4.1e-06 57.4 187 28.3
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 4.1e-06 57.4 315 27.3
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 4.1e-06 57.4 136 25.7
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 4.1e-06 57.4 122 29.5
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 4.1e-06 57.4 122 29.5
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 4.1e-06 57.4 122 29.5
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 5.4e-06 57.0 271 23.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 7.1e-06 56.6 72 44.4
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 7.1e-06 56.6 195 26.2
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 9.2e-06 56.2 147 23.1


User provided reference genes

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