Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 3.3e-131 471.9 266 100.0
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.1e-97 360.5 272 75.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 1.2e-96 357.1 272 74.6
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 8.6e-95 350.9 272 74.3
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 2.4e-76 289.7 207 75.4
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 6.8e-76 288.1 236 71.6
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.7e-74 283.5 248 64.5
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.1e-73 280.8 269 61.3
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.4e-73 280.4 175 84.0
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 1.9e-73 280.0 268 61.9
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 2.4e-73 279.6 260 64.6
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 2.4e-73 279.6 267 65.5
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 4.1e-73 278.9 175 82.3
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 5.4e-73 278.5 205 78.0
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 9.2e-73 277.7 269 61.3
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.2e-72 277.3 204 72.5
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 6.0e-72 275.0 208 70.2
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 6.0e-72 275.0 217 70.5
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.7e-71 273.5 175 79.4
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 3.0e-71 272.7 175 81.1
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 6.6e-71 271.6 271 59.4
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.1e-70 270.8 282 61.7
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 1.9e-70 270.0 211 68.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 3.3e-70 269.2 217 71.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 4.3e-70 268.9 227 66.1
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 7.3e-70 268.1 278 58.3
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.2e-69 267.3 208 69.7
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 2.8e-69 266.2 257 60.7
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 3.6e-69 265.8 274 62.8
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 4.7e-69 265.4 175 78.9
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 8.1e-69 264.6 175 80.0
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 1.1e-68 264.2 236 64.0
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 3.1e-68 262.7 272 56.2
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.2e-67 260.8 176 77.3
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 2.6e-67 259.6 264 59.1
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 4.4e-67 258.8 175 76.0
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 1.3e-66 257.3 175 74.9
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 4.9e-66 255.4 176 75.6
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.1e-65 254.2 264 53.8
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.4e-65 253.8 264 53.8
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.9e-65 253.4 176 73.9
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 2.4e-65 253.1 261 57.1
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 4.2e-65 252.3 178 74.2
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 5.4e-65 251.9 176 75.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 5.4e-65 251.9 232 68.5
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 7.1e-65 251.5 175 74.3
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 1.2e-64 250.8 176 73.9
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 2.7e-64 249.6 176 72.7
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 2.7e-64 249.6 266 59.4
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 3.5e-64 249.2 177 76.3
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 3.5e-64 249.2 177 72.3
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 4.6e-64 248.8 200 68.0
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 6.0e-64 248.4 277 57.8
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 6.0e-64 248.4 177 73.4
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.0e-63 247.7 175 74.9
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 1.0e-63 247.7 262 57.3
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 1.0e-63 247.7 178 74.2
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 1.7e-63 246.9 267 58.8
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.7e-63 246.9 177 72.9
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 3.0e-63 246.1 177 71.2
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 3.9e-63 245.7 170 75.3
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 6.6e-63 245.0 177 71.8
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.1e-62 244.2 177 74.6
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.5e-62 243.8 274 55.5
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 4.3e-62 242.3 177 70.6
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 4.3e-62 242.3 177 70.6
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 4.3e-62 242.3 177 70.6
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 5.6e-62 241.9 177 70.1
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.6e-61 240.4 178 71.3
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 6.2e-61 238.4 194 66.5
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 3.1e-60 236.1 259 59.1
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 2.0e-59 233.4 170 73.5
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.3e-58 230.7 197 62.9
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.3e-58 230.7 166 71.7
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.7e-58 230.3 166 71.7
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.8e-58 229.2 166 71.1
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 2.4e-57 226.5 146 79.5
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 4.2e-57 225.7 155 74.8
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 5.4e-57 225.3 161 70.2
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 7.1e-57 224.9 162 70.4
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 7.9e-56 221.5 198 68.2
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 6.7e-55 218.4 224 56.7
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.4e-52 210.7 251 57.0
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.5e-51 207.2 154 67.5
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 2.6e-51 206.5 147 74.8
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 2.6e-51 206.5 237 56.1
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 3.2e-49 199.5 146 73.3
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.6e-48 197.2 145 71.0
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 3.5e-48 196.1 264 46.2
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 3.9e-47 192.6 225 51.6
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.1e-46 191.0 224 56.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.0e-43 180.3 164 61.0
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.5e-41 173.3 173 54.9
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 5.5e-41 172.2 179 54.2
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.2e-40 171.0 121 72.7
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.0e-39 167.9 122 71.3
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.6e-37 160.6 175 54.9
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.2e-37 160.2 157 58.0
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 5.0e-34 149.1 156 55.1
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 6.7e-31 138.7 103 68.9
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 4.8e-29 132.5 84 83.3
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 4.8e-29 132.5 148 55.4
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 6.3e-29 132.1 129 57.4
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 6.9e-28 128.6 178 44.4
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 1.3e-26 124.4 148 54.7
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 2.9e-26 123.2 83 73.5
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 8.8e-23 111.7 84 67.9
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 7.4e-22 108.6 72 73.6
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 1.7e-21 107.5 184 40.2
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 1.7e-21 107.5 90 57.8
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 9.1e-20 101.7 156 55.1
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.2e-19 101.3 64 79.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 3.4e-19 99.8 128 48.4
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 4.5e-19 99.4 177 38.4
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 3.2e-17 93.2 72 75.0
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 2.1e-16 90.5 56 82.1
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.4e-15 87.8 136 46.3
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 6.7e-15 85.5 61 70.5
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 3.7e-13 79.7 103 43.7
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 9.1e-12 75.1 47 76.6
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 4.5e-11 72.8 79 51.9
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.1e-09 68.2 47 66.0
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.1e-09 68.2 43 72.1


User provided reference genes

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