Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.2e-217 759.6 403 100.0
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.5e-172 608.6 412 81.3
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 2.9e-163 578.9 405 77.3
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 6.5e-163 577.8 374 82.1
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 5.5e-162 574.7 405 76.8
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 2.2e-150 536.2 367 77.1
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 6.2e-121 438.3 405 61.5
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 8.1e-121 438.0 411 59.9
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 2.4e-120 436.4 406 61.3
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.7e-118 430.3 406 61.1
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 2.9e-118 429.5 409 59.4
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.8e-118 429.1 407 60.4
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.7e-115 420.2 378 62.4
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 5.1e-115 418.7 434 57.4
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 7.3e-114 414.8 410 58.0
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 9.6e-114 414.5 406 58.6
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 6.0e-108 395.2 404 56.7
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.2e-103 380.9 336 60.4
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 7.6e-103 378.3 467 50.1
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.2e-102 376.7 467 49.7
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.2e-102 376.7 458 50.0
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.6e-100 369.0 458 49.6
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 1.8e-99 367.1 406 54.2
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 3.9e-99 365.9 419 54.4
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 1.1e-98 364.4 467 49.5
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.5e-98 364.0 458 49.6
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.9e-98 363.6 404 55.4
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 5.6e-98 362.1 412 55.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 9.6e-98 361.3 376 54.0
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.1e-96 357.8 387 53.2
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.4e-96 357.5 415 51.6
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.0e-94 351.3 235 80.4
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.8e-94 349.4 415 53.0
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.1e-90 337.8 343 56.3
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 3.3e-90 336.3 408 51.7
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 5.7e-90 335.5 428 49.8
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 9.7e-90 334.7 440 47.3
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.8e-88 330.5 286 62.6
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 2.4e-88 330.1 411 46.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.1e-88 329.3 417 52.0
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.0e-86 324.7 418 49.5
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.7e-86 323.9 422 49.3
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 3.6e-84 316.2 454 45.2
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 3.6e-84 316.2 253 68.4
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 5.1e-83 312.4 416 48.6
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 4.3e-82 309.3 419 48.7
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 3.7e-81 306.2 417 47.5
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 4.8e-81 305.8 440 46.1
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 8.2e-81 305.1 310 57.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 3.1e-80 303.1 405 48.6
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 9.1e-80 301.6 384 47.1
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.5e-79 300.8 395 48.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.0e-78 298.1 394 48.5
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 5.0e-78 295.8 429 45.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.1e-77 294.7 382 49.2
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 1.9e-77 293.9 465 45.4
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 1.2e-76 291.2 459 44.7
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.2e-76 291.2 422 44.8
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 6.1e-76 288.9 460 42.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.0e-75 288.1 407 47.9
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.4e-75 287.7 377 46.9
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.3e-75 287.0 412 44.4
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 8.8e-75 285.0 456 41.9
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.0e-74 283.9 471 41.0
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 3.3e-74 283.1 456 41.7
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.3e-73 281.2 424 46.9
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 5.9e-71 272.3 419 44.9
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.7e-70 270.8 262 56.1
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 3.8e-70 269.6 463 40.4
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 3.8e-70 269.6 466 40.6
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.1e-69 268.1 419 42.2
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.9e-69 267.3 403 46.4
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 7.2e-69 265.4 427 41.9
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.2e-68 264.6 346 47.1
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 3.6e-68 263.1 335 49.0
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 6.1e-68 262.3 248 57.3
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.8e-67 260.8 390 46.9
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 6.7e-67 258.8 389 45.0
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 1.1e-66 258.1 427 40.7
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.0e-66 257.3 396 42.4
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 2.0e-66 257.3 376 44.9
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.4e-66 256.1 271 55.7
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-65 254.6 212 66.0
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.7e-65 254.2 411 40.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 4.8e-65 252.7 430 40.2
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 7.7e-63 245.4 431 42.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.3e-62 244.6 368 39.1
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.2e-61 240.0 414 42.0
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 4.2e-61 239.6 417 41.5
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 2.7e-60 236.9 258 49.6
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 3.6e-60 236.5 418 41.6
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 4.7e-60 236.1 400 40.0
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.0e-59 235.0 394 37.6
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.8e-59 234.2 431 41.1
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.8e-59 234.2 411 40.6
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.3e-59 233.8 245 57.6
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 4.4e-58 229.6 458 40.2
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 3.7e-57 226.5 383 42.6
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.3e-57 225.7 279 50.2
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 3.1e-56 223.4 346 40.2
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 9.1e-56 221.9 289 49.1
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 5.9e-55 219.2 444 38.5
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.7e-52 210.3 467 37.3
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 4.0e-51 206.5 258 50.0
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 1.5e-50 204.5 195 60.5
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.2e-44 184.9 328 38.7
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.7e-44 183.0 335 38.2
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 4.7e-44 183.0 255 45.1
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 7.5e-42 175.6 432 34.3
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 1.5e-37 161.4 147 61.2
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 8.9e-35 152.1 326 37.1
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 4.4e-34 149.8 333 36.9
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.0e-30 138.7 113 62.8
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.5e-26 124.8 408 34.3
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.4e-26 123.2 141 50.4
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 2.9e-25 120.6 293 34.8
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 7.0e-24 115.9 493 26.0
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 6.0e-23 112.8 139 45.3
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.0e-22 112.1 256 37.1
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.9e-21 107.8 94 53.2
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.3e-21 106.7 80 76.2
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.3e-21 106.7 103 59.2
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 9.9e-18 95.5 74 74.3
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.4e-17 92.8 79 55.7
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 2.4e-16 90.9 152 40.8
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.6e-15 86.7 111 51.4
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-14 85.1 68 57.4
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 6.6e-14 82.8 81 61.7
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.5e-13 80.9 121 38.0
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.3e-13 80.1 69 58.0
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 7.3e-13 79.3 71 50.7
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.2e-12 78.6 130 40.0
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.6e-12 77.0 131 41.2
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 3.8e-09 67.0 65 60.0
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 7.1e-08 62.8 94 39.4
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 4.6e-07 60.1 69 62.3
BcaB08g36158 Brassica carinata HOM05D005648 ORTHO05D039826 3.9e-06 57.0 121 33.9
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.1e-06 56.6 80 41.2


User provided reference genes

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