Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 3.8e-202 708.0 361 100.0
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.6e-184 649.4 358 91.6
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 8.7e-183 643.7 347 93.7
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 3.4e-179 631.7 357 89.6
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 1.0e-178 630.2 375 86.4
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.2e-178 629.0 357 89.4
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 6.0e-176 620.9 348 91.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.3e-175 619.8 348 91.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.0e-175 618.6 348 90.2
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.1e-169 600.1 354 85.9
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 6.7e-167 590.9 333 87.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.5e-166 589.0 329 88.8
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.3e-165 586.6 351 84.0
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.6e-165 586.3 351 83.8
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.3e-165 584.3 348 84.5
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 8.2e-165 583.9 352 84.7
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 4.1e-164 581.6 360 82.5
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 5.3e-164 581.3 346 84.7
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 2.0e-163 579.3 357 81.5
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.0e-162 577.0 350 83.7
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.7e-162 576.2 345 84.1
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 2.2e-162 575.9 341 84.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.9e-162 575.5 329 86.9
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 5.0e-162 574.7 328 86.0
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 6.5e-162 574.3 331 86.1
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 6.5e-162 574.3 363 81.3
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 8.5e-162 573.9 335 85.7
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 8.5e-162 573.9 347 82.7
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-161 573.5 328 86.0
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.1e-161 573.5 328 86.0
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.1e-161 573.5 328 86.0
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.1e-161 573.5 334 85.6
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.1e-161 573.5 339 84.4
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-161 573.2 328 86.0
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 1.4e-161 573.2 354 82.2
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.5e-161 572.4 345 82.9
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 2.5e-161 572.4 344 82.3
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.5e-161 572.4 330 86.1
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 4.2e-161 571.6 344 83.4
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-160 570.1 329 85.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 1.2e-160 570.1 326 86.5
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 1.2e-160 570.1 334 84.1
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 2.1e-160 569.3 349 81.4
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 2.7e-160 568.9 337 83.7
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 2.7e-160 568.9 328 86.6
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 2.7e-160 568.9 351 81.5
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.7e-160 568.9 328 86.0
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.6e-160 568.5 343 82.8
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 3.6e-160 568.5 335 84.5
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.6e-160 568.5 336 83.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 4.6e-160 568.2 345 82.6
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 7.9e-160 567.4 341 82.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 7.9e-160 567.4 326 86.8
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.0e-159 567.0 331 84.3
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 2.3e-159 565.8 329 85.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 5.1e-159 564.7 345 82.0
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 5.1e-159 564.7 328 85.1
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 5.1e-159 564.7 328 85.1
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 5.1e-159 564.7 328 86.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 8.8e-159 563.9 331 83.7
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.8e-159 563.9 365 79.5
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.1e-158 563.5 346 82.4
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 2.0e-158 562.8 328 84.8
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.5e-158 562.4 343 82.2
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.3e-158 562.0 325 85.8
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 5.7e-158 561.2 328 84.5
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 7.4e-158 560.8 328 84.5
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 9.7e-158 560.5 327 84.1
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.7e-157 559.7 339 82.0
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.7e-157 559.7 347 80.7
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.8e-157 558.9 346 80.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.7e-157 558.5 340 81.8
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 2.4e-156 555.8 347 80.1
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 2.4e-156 555.8 349 80.8
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.1e-156 555.4 347 80.1
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 6.9e-156 554.3 346 80.1
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 9.1e-156 553.9 324 84.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.5e-155 553.1 330 83.0
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.0e-155 552.7 347 79.8
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.0e-155 552.7 347 79.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 3.4e-155 552.0 360 78.9
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 7.7e-155 550.8 327 84.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-154 550.4 347 79.3
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 2.9e-154 548.9 349 79.7
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 6.5e-154 547.7 325 83.4
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 6.5e-154 547.7 346 80.9
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 8.5e-154 547.4 349 79.4
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.1e-153 547.0 347 79.3
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-153 547.0 364 76.9
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.4e-153 546.6 351 78.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 2.1e-152 542.7 338 80.8
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 2.7e-152 542.3 324 81.8
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.4e-151 540.0 372 75.0
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 3.9e-151 538.5 375 75.2
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 5.1e-151 538.1 323 82.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-150 537.0 335 81.2
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.6e-150 535.8 325 83.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.7e-149 531.9 329 83.0
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 4.8e-149 531.6 347 78.4
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 8.2e-149 530.8 330 78.2
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.6e-147 526.6 297 87.2
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.5e-145 520.0 322 79.5
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 7.2e-145 517.7 297 86.5
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.8e-143 510.8 382 72.0
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.3e-141 504.6 388 68.0
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 1.1e-140 503.8 347 72.9
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.4e-140 502.7 288 87.2
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 4.1e-140 501.9 341 76.2
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.5e-139 498.4 328 72.9
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 4.2e-137 491.9 339 73.7
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.0e-135 487.3 357 69.7
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 6.8e-135 484.6 324 74.1
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 9.1e-132 474.2 337 74.5
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.7e-131 471.1 270 89.6
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.0e-127 460.7 322 69.6
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.0e-127 460.7 337 67.1
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 3.0e-127 459.1 358 67.9
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.5e-126 456.8 330 67.6
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 4.4e-126 455.3 270 84.4
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 3.1e-124 449.1 328 67.4
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 9.2e-124 447.6 328 67.1
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.9e-122 442.6 365 64.1
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.1e-121 440.7 296 77.4
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.5e-121 440.3 314 70.7
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 4.3e-121 438.7 331 65.9
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.1e-116 422.2 324 63.3
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 7.8e-115 417.9 312 64.7
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.5e-113 413.7 339 66.1
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-113 411.0 243 85.2
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 6.2e-112 408.3 252 81.0
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 8.9e-111 404.4 351 63.2
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.4e-108 396.4 244 80.7
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 7.0e-108 394.8 240 82.9
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.7e-107 392.9 368 57.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 7.8e-107 391.3 300 64.3
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-105 387.5 274 67.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.0e-102 376.7 275 70.2
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.8e-102 374.4 368 58.4
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.9e-101 372.1 239 76.2
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 6.0e-99 365.2 239 76.2
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.0e-98 364.4 244 75.8
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.2e-96 357.5 320 56.6
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.8e-87 327.0 197 83.2
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 9.3e-76 288.1 285 58.9
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 6.0e-75 285.4 203 75.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.8e-63 247.3 302 47.0
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-61 239.6 159 73.6
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.6e-59 234.2 161 69.6
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.1e-56 223.8 253 54.5
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.3e-56 222.2 358 44.4
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 4.1e-55 219.5 138 79.7
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 4.6e-51 206.1 129 78.3
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 2.3e-50 203.8 115 83.5
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 1.0e-45 188.3 236 41.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.3e-40 171.4 210 45.7
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 4.1e-39 166.4 99 76.8
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.9e-39 165.6 104 76.9
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 5.0e-37 159.5 98 77.6
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 9.4e-36 155.2 88 80.7
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.6e-35 153.3 93 76.3
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.0e-33 147.5 96 79.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.2e-32 144.1 110 71.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.5e-30 136.7 189 51.9
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 1.7e-29 134.4 76 84.2
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.2e-29 134.0 83 74.7
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.5e-22 110.2 66 78.8
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 3.8e-21 106.7 74 67.6
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 8.5e-21 105.5 84 63.1
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.9e-20 104.4 82 61.0
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.2e-20 103.2 73 61.6
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 6.1e-19 99.4 63 82.5
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.2e-17 95.1 62 77.4
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 3.7e-16 90.1 78 70.5
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 1.8e-07 61.2 47 63.8


User provided reference genes

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