Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.2e-305 1052.4 519 100.0
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 5.8e-273 943.7 526 89.7
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.4e-271 939.1 526 89.4
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.0e-269 931.4 511 90.0
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.1e-268 929.5 526 88.6
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 2.9e-256 888.3 470 93.6
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.4e-253 879.4 515 84.5
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.1e-250 869.8 515 84.3
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.0e-245 853.2 517 83.6
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.4e-245 852.8 518 82.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 5.2e-245 850.9 522 81.4
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.5e-244 849.4 516 82.2
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.5e-244 849.4 520 82.1
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.4e-242 842.0 509 82.7
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.4e-242 842.0 514 81.3
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 5.3e-242 840.9 508 82.7
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.0e-242 840.5 511 82.0
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.2e-241 839.7 507 82.2
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-241 839.3 508 82.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-241 838.6 508 82.5
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-240 836.3 508 81.9
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.2e-240 835.5 508 82.1
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 9.4e-239 830.1 500 83.0
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 5.7e-236 820.8 515 79.6
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 7.5e-236 820.5 505 81.0
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 2.2e-235 818.9 517 81.0
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.8e-234 815.8 504 80.2
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 3.1e-234 815.1 506 81.2
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 5.4e-234 814.3 504 81.3
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 7.0e-234 813.9 512 79.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.7e-232 809.3 506 80.2
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.7e-232 809.3 512 79.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.5e-232 807.4 512 79.1
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.5e-231 805.4 512 79.1
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 4.2e-231 804.7 515 78.6
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 2.7e-230 802.0 522 77.6
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.6e-230 801.6 517 78.3
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 4.7e-230 801.2 507 78.7
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 6.1e-230 800.8 489 81.4
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.0e-229 798.5 518 77.6
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 5.2e-229 797.7 540 76.7
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 8.8e-229 797.0 515 77.9
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 8.8e-229 797.0 513 78.0
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.6e-228 795.4 519 77.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.7e-228 794.3 478 82.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.5e-228 793.9 514 78.2
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.2e-227 792.3 514 78.0
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.8e-227 792.0 512 78.1
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 3.7e-227 791.6 542 75.6
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 4.9e-227 791.2 502 79.1
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.9e-227 791.2 526 77.0
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 8.3e-227 790.4 489 80.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.4e-226 789.6 507 78.7
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.4e-226 788.9 516 78.3
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.4e-226 787.7 512 77.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.2e-225 786.6 504 78.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.9e-225 784.3 552 73.6
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.7e-224 782.7 508 77.0
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 3.8e-224 781.6 508 78.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.0e-224 781.2 508 77.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 5.0e-224 781.2 524 76.5
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-223 778.9 494 78.9
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.2e-223 777.3 457 84.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.1e-222 775.8 501 77.6
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.8e-222 775.4 512 77.5
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.8e-222 775.4 507 76.7
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 8.0e-222 773.9 501 77.6
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 8.0e-222 773.9 507 78.1
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 8.0e-222 773.9 507 78.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 6.8e-221 770.8 521 74.9
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 7.0e-218 760.8 517 76.2
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 4.6e-217 758.1 503 76.9
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 4.6e-217 758.1 515 76.7
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.8e-217 757.3 515 75.0
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.3e-216 755.7 507 76.3
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 2.9e-216 755.4 512 75.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.1e-214 749.2 514 74.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.3e-213 745.7 595 67.9
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.1e-213 745.3 429 86.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 3.1e-213 745.3 538 71.9
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 5.2e-213 744.6 495 77.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 6.8e-213 744.2 515 73.2
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 9.8e-212 740.3 477 76.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.9e-211 738.8 525 74.1
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.9e-211 738.8 527 71.9
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.6e-209 733.0 512 73.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.3e-208 729.9 497 73.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.3e-207 725.3 475 78.3
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.6e-207 724.5 475 78.3
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.5e-204 716.5 526 71.9
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 3.7e-203 711.8 503 74.8
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.6e-201 704.9 508 71.3
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 6.6e-200 701.0 526 69.0
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.4e-195 684.1 515 68.9
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.1e-194 681.0 414 82.4
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.1e-191 673.7 437 78.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 5.2e-189 664.8 530 66.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.8e-182 642.5 514 65.6
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.4e-178 629.4 471 70.5
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.1e-177 626.3 499 63.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.2e-169 600.5 542 58.1
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.3e-167 592.0 484 63.8
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.3e-167 592.0 486 64.0
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.8e-165 586.6 378 78.6
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 9.0e-165 584.3 450 68.4
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.5e-164 583.6 484 63.4
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.9e-163 579.3 370 80.0
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 3.8e-163 578.9 370 80.3
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.5e-162 576.2 368 79.3
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.1e-157 560.8 392 73.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 3.2e-154 549.3 333 82.9
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 5.5e-154 548.5 354 79.1
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-152 544.3 473 61.3
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 5.1e-152 542.0 505 57.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 7.4e-151 538.1 476 59.0
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.0e-147 527.7 529 54.3
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.1e-143 514.2 504 55.0
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 9.7e-143 511.1 338 79.9
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-139 500.4 293 83.6
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 5.0e-139 498.8 495 53.5
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.2e-138 495.0 357 74.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.8e-133 480.3 508 50.8
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.3e-128 463.4 423 61.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.6e-113 414.1 365 64.9
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.9e-110 402.5 474 52.3
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 6.3e-110 402.1 546 42.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.3e-110 402.1 318 66.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.2e-96 355.9 296 64.2
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.7e-86 324.3 317 59.6
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.1e-85 321.6 220 75.0
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 9.9e-79 298.5 253 62.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.9e-77 294.3 164 84.8
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.2e-77 292.0 197 71.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.5e-71 274.6 396 40.7
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 6.4e-70 269.2 149 84.6
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.3e-67 260.8 144 86.1
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.9e-66 257.7 216 68.1
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.7e-62 244.6 140 85.0
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.2e-60 238.4 308 42.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 5.3e-56 223.0 330 42.1
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.8e-43 181.4 164 58.5
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.4e-39 167.2 198 51.0
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.9e-38 164.1 100 76.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.6e-36 156.8 105 70.5
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-29 135.2 117 65.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.6e-28 130.2 373 28.4
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.1e-26 125.6 68 85.3
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.7e-17 94.0 441 24.9
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.3e-14 85.5 65 67.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.5e-13 80.1 93 54.8
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.7e-12 77.0 45 82.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.8e-11 75.1 72 54.2
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.4e-10 70.5 38 86.8
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.2e-09 68.2 43 62.8
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 6.3e-09 66.6 64 59.4
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.0e-08 63.2 46 58.7
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.0e-06 59.3 112 41.1


User provided reference genes

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