Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 0.0e+00 1745.7 861 100.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 0.0e+00 1418.3 866 81.1
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 0.0e+00 1367.1 866 77.4
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 0.0e+00 1354.3 866 77.3
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 0.0e+00 1290.0 875 74.4
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 6.4e-309 1063.9 872 63.0
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 7.6e-302 1040.4 667 76.9
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 6.2e-296 1020.8 868 61.6
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.7e-293 1012.7 868 60.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 8.7e-290 1000.3 866 60.3
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.2e-288 995.7 867 59.5
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 3.1e-279 965.3 870 57.7
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.1e-279 965.3 870 57.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 5.0e-277 958.0 870 57.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.0e-274 950.3 867 58.5
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.3e-272 943.3 869 58.5
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 7.0e-271 937.6 871 56.8
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.6e-270 935.6 870 57.4
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.5e-270 935.3 869 56.7
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.3e-269 933.3 850 57.5
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 2.2e-269 932.6 867 56.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.1e-268 930.2 869 57.4
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.8e-266 922.9 894 55.8
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.8e-266 922.9 868 56.9
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 8.8e-266 920.6 868 57.1
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.5e-261 904.4 884 53.4
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.9e-260 902.9 887 55.8
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 3.6e-259 898.7 868 55.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 4.4e-257 891.7 868 54.7
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 4.4e-249 865.1 882 52.5
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.5e-244 848.2 870 52.6
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.5e-244 848.2 870 52.6
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 4.4e-241 838.6 880 52.7
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 2.2e-240 836.3 891 51.3
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-239 833.2 897 50.9
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 7.0e-239 831.2 895 52.0
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.6e-238 830.1 880 51.2
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.0e-238 829.7 896 51.7
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.0e-238 829.7 897 50.7
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 5.6e-236 821.6 891 51.4
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.2e-235 820.5 870 51.6
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.0e-234 817.4 879 51.9
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-234 817.0 920 49.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.4e-234 817.0 733 56.5
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 4.6e-230 802.0 893 49.6
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.3e-229 799.7 897 49.9
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.9e-228 796.6 847 52.8
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.1e-226 790.8 877 51.5
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-226 790.0 755 54.8
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.1e-226 789.3 888 50.1
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 1.5e-225 786.9 847 51.5
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 4.4e-225 785.4 876 49.8
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 6.4e-224 781.6 845 50.8
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.4e-223 779.6 852 51.1
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 3.0e-221 772.7 862 50.7
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 5.1e-221 771.9 857 49.6
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.9e-220 770.0 853 51.2
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 3.6e-219 765.8 841 50.3
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.8e-218 763.5 864 49.7
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.2e-218 761.9 877 47.9
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 6.8e-218 761.5 857 49.5
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.3e-216 757.3 854 47.3
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.9e-216 756.1 843 50.3
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 3.7e-216 755.7 866 48.4
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.9e-216 755.4 851 49.1
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.3e-216 754.6 746 55.0
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.4e-215 753.8 847 50.5
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.9e-215 753.4 870 48.3
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.9e-215 753.4 877 47.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 5.4e-215 751.9 877 50.1
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.5e-214 749.2 865 48.1
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 7.8e-214 748.0 855 51.0
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.3e-213 747.3 848 50.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.0e-213 746.1 877 47.3
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.2e-211 740.7 872 47.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.1e-211 740.0 846 49.6
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 2.4e-210 736.5 856 47.2
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.1e-210 736.1 876 46.7
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.0e-210 735.7 821 50.1
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 5.2e-210 735.3 855 49.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 5.2e-210 735.3 855 49.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 8.9e-210 734.6 871 47.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 1.7e-208 730.3 921 46.0
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.7e-208 730.3 861 46.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 3.8e-208 729.2 862 47.2
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 1.4e-207 727.2 874 46.6
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.5e-204 716.5 970 44.3
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 3.3e-204 716.1 869 45.8
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.2e-203 711.8 858 48.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.2e-203 711.8 858 48.3
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.8e-202 710.3 875 48.0
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 6.9e-202 708.4 929 45.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 6.4e-200 701.8 779 46.7
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 1.1e-194 684.5 868 44.7
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 3.4e-193 679.5 876 45.1
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 7.6e-193 678.3 868 43.2
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 7.1e-191 671.8 885 43.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.6e-190 670.6 770 49.9
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 4.3e-188 662.5 913 43.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.5e-185 654.1 613 55.5
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.4e-183 647.5 643 56.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 1.3e-179 634.4 877 44.2
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 8.4e-176 621.7 820 42.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 3.5e-174 616.3 881 41.7
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.8e-173 614.0 708 49.0
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.9e-168 596.7 609 51.2
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.2e-167 593.2 736 46.6
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 4.6e-166 589.3 866 41.7
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-155 554.3 576 53.5
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 4.8e-155 552.7 687 44.0
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.0e-154 548.9 663 46.5
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 8.2e-147 525.4 504 56.3
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.6e-142 511.1 882 39.3
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 2.2e-139 500.7 572 49.7
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 3.7e-139 500.0 630 45.4
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.7e-128 464.5 545 49.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.8e-118 430.6 354 60.2
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-107 395.2 653 37.2
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 4.9e-107 393.3 569 41.5
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 3.0e-96 357.5 548 39.4
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.3e-95 352.8 649 35.4
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.8e-92 343.2 502 42.0
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 7.6e-92 342.8 374 51.6
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.8e-86 324.3 949 28.7
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 2.6e-84 317.8 308 54.2
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.5e-76 290.4 518 37.1
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.9e-74 285.0 475 38.9
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 4.6e-73 280.4 673 30.5
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 7.9e-73 279.6 620 32.1
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.3e-70 272.3 226 62.8
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 3.7e-70 270.8 334 47.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 9.0e-61 239.6 191 66.0
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.2e-60 239.2 180 66.1
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.8e-56 225.3 302 44.7
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.1e-55 222.6 185 65.9
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.8e-54 218.0 200 59.5
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 6.3e-54 216.9 254 48.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-51 209.5 218 55.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.7e-47 193.7 463 30.5
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 9.7e-47 193.0 174 59.8
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 2.8e-46 191.4 174 58.0
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.2e-41 176.0 195 50.3
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 5.7e-39 167.2 165 57.6
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 2.8e-38 164.9 123 65.0
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 6.3e-38 163.7 123 64.2
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.4e-37 162.5 163 55.2
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 4.1e-37 161.0 116 65.5
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.6e-36 158.3 154 58.4
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 2.5e-34 151.8 112 64.3
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-33 148.7 120 55.8
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.6e-33 147.9 155 56.8
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 4.7e-33 147.5 195 39.5
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.1e-31 142.9 155 55.5
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.5e-31 142.5 153 53.6
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.5e-31 142.5 99 70.7
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 3.3e-31 141.4 148 54.1
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 5.7e-31 140.6 283 32.2
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.5e-31 140.2 96 70.8
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-29 135.6 93 72.0
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.6e-25 121.3 99 59.6
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 6.1e-25 120.6 264 31.4
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 8.0e-25 120.2 168 41.7
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.7e-22 112.5 293 29.4
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 5.4e-21 107.5 68 72.1
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.1e-18 99.8 316 26.6
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.6e-17 95.9 135 43.0
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 8.0e-17 93.6 72 72.2
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 3.4e-15 88.2 119 50.4
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.4e-15 87.8 206 32.5
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 2.8e-14 85.1 243 29.2
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.4e-13 80.9 77 59.7
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-11 76.3 64 62.5
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-11 75.5 63 66.7
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.6e-11 73.9 58 62.1
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.5e-10 72.8 90 48.9
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.6e-09 68.2 80 45.0
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 8.0e-09 67.0 114 37.7
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.2e-08 64.3 49 57.1
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.2e-08 64.3 50 68.0
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.2e-07 63.2 141 31.2
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 6.4e-06 57.4 34 67.6


User provided reference genes

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