Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.9e-82 308.5 157 100.0
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.6e-75 285.4 157 92.4
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.5e-73 277.7 157 89.8
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.1e-73 277.3 157 89.8
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.1e-73 277.3 157 89.8
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.8e-66 255.0 159 82.4
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.9e-65 252.7 159 83.0
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.5e-65 252.3 159 84.3
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.1e-64 249.2 159 81.8
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 3.5e-64 248.4 159 81.1
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 6.0e-64 247.7 159 81.8
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 7.9e-64 247.3 159 81.1
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-63 246.9 159 81.1
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.3e-63 245.7 159 80.5
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 8.7e-63 243.8 159 82.4
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.1e-62 243.4 158 80.4
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 4.3e-62 241.5 159 79.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 5.7e-62 241.1 159 78.6
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.3e-61 240.0 159 78.6
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.1e-61 239.2 159 78.6
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.8e-61 238.8 159 77.4
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 6.3e-61 237.7 157 78.3
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.2e-61 237.3 159 78.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.1e-60 236.9 157 79.0
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 5.3e-60 234.6 159 78.0
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.5e-59 233.0 157 77.1
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 2.0e-59 232.6 149 81.9
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.6e-59 232.3 159 77.4
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 2.6e-59 232.3 159 76.1
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.0e-58 230.3 174 75.3
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.3e-58 229.9 152 77.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.3e-58 229.9 130 92.3
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.7e-58 229.6 145 83.4
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 6.5e-58 227.6 151 77.5
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.1e-57 226.9 159 76.1
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 4.2e-57 224.9 157 76.4
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 9.3e-57 223.8 148 78.4
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 6.1e-56 221.1 156 73.1
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.3e-55 219.9 158 73.4
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.9e-55 218.4 157 76.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 5.1e-55 218.0 158 74.7
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 5.1e-55 218.0 158 74.1
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 6.7e-55 217.6 158 74.7
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 6.7e-55 217.6 156 76.3
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 3.3e-54 215.3 156 75.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 4.3e-54 214.9 156 74.4
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.4e-54 214.2 160 71.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.3e-53 213.4 158 74.7
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.7e-53 211.8 158 74.7
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 8.2e-53 210.7 156 71.8
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.4e-52 209.9 158 70.9
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.8e-52 209.5 166 71.7
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.4e-52 209.1 158 69.6
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 3.1e-52 208.8 156 71.2
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.1e-52 208.8 154 74.7
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.1e-52 208.4 156 71.2
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.3e-52 208.0 156 71.2
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.3e-52 208.0 156 71.8
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 5.3e-52 208.0 156 71.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.3e-52 208.0 156 71.8
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 9.1e-52 207.2 155 70.3
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.5e-51 206.5 224 54.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.6e-51 205.7 156 70.5
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.6e-51 205.7 156 70.5
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 7.7e-51 204.1 160 68.8
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.3e-50 203.4 154 71.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.8e-50 201.8 155 69.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 3.8e-50 201.8 155 72.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.0e-50 201.4 158 70.3
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.4e-49 199.9 155 72.3
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.5e-49 198.0 155 72.3
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.4e-49 197.2 156 67.3
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 9.4e-49 197.2 156 67.3
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.2e-48 196.8 202 58.4
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.2e-48 196.8 158 68.4
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.1e-48 196.1 155 71.0
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.1e-48 196.1 156 67.9
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 2.7e-48 195.7 155 71.0
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 6.1e-48 194.5 156 67.3
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 6.1e-48 194.5 160 66.9
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.9e-48 194.1 156 66.7
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.0e-47 193.7 160 69.4
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.8e-47 193.0 156 66.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 2.3e-47 192.6 158 68.4
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.0e-47 192.2 156 67.3
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.9e-47 191.8 160 68.8
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.5e-46 189.9 154 67.5
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.5e-46 189.9 159 64.8
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.0e-46 189.5 154 68.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.6e-46 189.1 155 70.3
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.3e-46 188.7 148 71.6
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.7e-46 188.0 153 65.4
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 9.7e-46 187.2 158 63.3
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.3e-45 186.8 156 64.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.7e-45 186.4 157 64.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 6.3e-45 184.5 156 64.1
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.8e-44 183.0 157 63.7
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.4e-44 182.6 154 66.9
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.1e-44 182.2 160 65.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 5.3e-44 181.4 156 64.1
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.0e-42 177.2 158 63.3
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.3e-42 176.8 157 67.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.7e-42 176.4 186 55.9
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.7e-42 176.4 270 44.1
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.7e-42 176.4 158 59.5
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.9e-42 175.6 156 62.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.0e-42 174.9 158 62.7
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 5.0e-42 174.9 153 65.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 6.5e-42 174.5 184 56.0
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.5e-42 174.5 155 62.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 8.5e-42 174.1 156 64.1
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.9e-41 172.9 155 62.6
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.5e-41 172.6 166 62.0
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.2e-41 171.8 155 61.3
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.1e-40 169.5 124 74.2
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.0e-39 167.2 157 61.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.0e-39 167.2 93 90.3
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.0e-39 167.2 146 64.4
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.0e-39 167.2 146 64.4
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.0e-39 165.6 153 60.8
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 3.9e-39 165.2 176 55.1
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.2e-39 164.9 93 88.2
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.6e-38 162.5 131 68.7
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.3e-38 162.2 154 57.8
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.3e-37 160.2 153 59.5
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.2e-37 159.5 95 87.4
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.8e-37 158.3 141 62.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 8.2e-37 157.5 154 56.5
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.1e-36 157.1 154 57.1
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.4e-36 156.8 139 64.0
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.1e-36 155.6 116 70.7
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 5.3e-36 154.8 142 62.7
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 5.3e-36 154.8 154 59.7
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 7.0e-36 154.5 154 55.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 7.0e-36 154.5 124 68.5
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.2e-35 153.7 113 69.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.0e-35 152.9 107 73.8
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.6e-35 152.5 152 56.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.6e-35 152.5 151 58.3
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.6e-35 152.5 157 54.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 3.5e-35 152.1 154 56.5
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 3.5e-35 152.1 154 56.5
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 3.5e-35 152.1 154 56.5
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 7.7e-35 151.0 155 56.1
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.3e-34 150.2 153 58.2
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.3e-34 150.2 93 78.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.2e-34 149.4 154 54.5
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.7e-32 141.7 96 74.0
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.0e-31 140.6 123 64.2
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.0e-31 139.0 120 65.0
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 5.2e-31 138.3 102 67.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-30 136.3 174 48.9
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.8e-29 132.5 159 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 6.3e-29 131.3 148 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.4e-28 129.4 145 53.8
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 5.3e-28 128.3 156 50.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.5e-27 125.6 126 55.6
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.9e-27 124.8 93 68.8
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.0e-26 121.7 94 66.0
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.2e-25 119.0 92 65.2
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 8.0e-24 114.4 146 51.4
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 4.0e-23 112.1 171 45.0
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 4.1e-20 102.1 86 67.4
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.7e-18 96.7 75 61.3
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 5.0e-18 95.1 82 54.9
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.5e-17 93.6 88 62.5
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.5e-17 93.6 89 61.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.6e-16 89.0 89 57.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 3.6e-16 89.0 61 72.1
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.8e-13 79.3 89 51.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.4e-12 76.3 46 76.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.4e-12 75.1 57 63.2
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.9e-11 71.6 57 61.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.6e-10 68.2 86 45.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.5e-09 67.0 66 50.0
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 3.3e-09 65.9 41 78.0
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 9.5e-09 64.3 92 48.9
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.1e-08 61.6 79 44.3
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 6.1e-08 61.6 63 60.3
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.5e-06 57.0 96 41.7
SHI09796 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-06 55.1 36 75.0


User provided reference genes

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