Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.1e-119 433.3 219 100.0
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.4e-111 406.4 220 93.6
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.1e-108 396.7 220 91.8
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.6e-108 394.4 220 91.4
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.6e-107 392.9 220 90.0
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 4.7e-107 391.3 220 91.4
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.4e-106 389.8 218 90.8
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.8e-106 389.4 219 89.0
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.0e-106 388.3 220 89.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 5.2e-106 387.9 220 91.4
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 4.9e-104 381.3 219 85.8
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 6.4e-104 380.9 219 85.8
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 6.4e-104 380.9 217 86.6
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 4.1e-103 378.3 219 87.2
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.2e-102 376.7 221 85.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.2e-102 376.7 221 85.5
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.2e-102 376.7 217 86.2
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.6e-102 376.3 217 86.6
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 2.7e-102 375.6 216 85.6
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 4.6e-102 374.8 219 84.5
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 6.0e-102 374.4 219 84.9
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.0e-101 373.6 219 86.3
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 3.0e-101 372.1 217 84.8
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 3.9e-101 371.7 221 84.6
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 3.9e-101 371.7 220 84.1
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 6.6e-101 370.9 219 84.0
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 6.6e-101 370.9 220 85.5
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.1e-100 370.2 219 84.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.5e-100 369.8 221 83.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.9e-100 369.4 220 83.6
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.5e-100 369.0 219 85.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.3e-100 368.6 217 85.3
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 5.6e-100 367.9 220 82.7
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 5.6e-100 367.9 217 84.3
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 7.3e-100 367.5 218 84.4
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 7.3e-100 367.5 219 83.1
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 9.5e-100 367.1 221 86.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.6e-99 366.3 219 84.5
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.1e-99 365.9 220 83.6
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 2.1e-99 365.9 218 83.9
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.6
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 4.7e-99 364.8 219 84.0
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 81.4
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 8.1e-99 364.0 219 82.6
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 8.1e-99 364.0 219 81.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 218 84.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 83.2
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 221 82.4
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.8e-98 362.8 221 82.4
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 3.1e-98 362.1 217 80.6
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 4.0e-98 361.7 221 81.9
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.2e-98 361.3 221 81.9
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.8e-98 360.9 217 82.5
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 82.3
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 8.9e-98 360.5 216 84.3
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.2e-97 360.1 218 83.9
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.2e-97 360.1 221 81.0
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 82.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.6e-97 359.0 220 81.8
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 2.6e-97 359.0 220 81.8
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 2.6e-97 359.0 220 81.8
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 2.6e-97 359.0 221 81.4
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 2.6e-97 359.0 217 82.5
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 4.4e-97 358.2 218 83.5
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 4.4e-97 358.2 217 82.0
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 4.4e-97 358.2 219 81.7
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.8
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.8
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 81.8
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 7.6e-97 357.5 220 82.7
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 9.9e-97 357.1 219 82.2
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 80.9
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.7e-96 356.3 220 81.4
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.2e-96 355.9 219 82.2
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 81.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 80.9
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 80.9
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.9e-96 355.5 217 82.0
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 3.7e-96 355.1 220 81.4
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 4.9e-96 354.8 218 80.7
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 6.4e-96 354.4 217 80.6
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.4e-96 354.4 217 80.6
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 8.4e-96 354.0 220 81.4
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.7
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.7
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.4e-95 352.4 217 80.2
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.2e-95 352.1 219 80.8
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 80.5
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 4.1e-95 351.7 219 80.8
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 4.1e-95 351.7 220 79.5
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.5
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 5.4e-95 351.3 230 77.8
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 9.2e-95 350.5 218 80.7
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 79.1
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.7e-94 349.0 219 79.0
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 3.5e-94 348.6 225 80.9
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.5e-94 348.6 218 80.7
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 3.5e-94 348.6 218 80.3
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 78.5
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 4.6e-94 348.2 219 79.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 4.6e-94 348.2 221 81.4
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 7.8e-94 347.4 215 81.9
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 7.8e-94 347.4 218 79.8
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 81.3
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 6.6e-93 344.4 218 80.3
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 79.1
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 9.6e-92 340.5 218 79.4
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 219 77.6
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 214 81.3
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 78.9
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 2.8e-91 339.0 218 78.9
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 3.6e-91 338.6 218 78.4
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 8.1e-91 337.4 217 78.8
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 8.1e-91 337.4 217 78.8
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 77.7
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 5.2e-90 334.7 221 75.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.6e-89 332.4 220 77.3
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 3.4e-89 332.0 214 78.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 5.8e-89 331.3 219 77.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.9e-88 328.9 215 79.1
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.0e-85 320.5 223 76.2
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.9e-84 316.2 193 83.4
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 6.4e-80 301.2 224 72.3
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 1.9e-79 299.7 163 86.5
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.6e-78 296.6 165 86.1
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 3.9e-77 292.0 173 81.5
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 5.8e-73 278.1 211 67.8
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.9e-71 273.1 172 76.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.2e-71 272.3 169 76.9
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.2e-70 270.4 174 75.9
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 2.1e-70 269.6 179 74.3
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 6.0e-70 268.1 219 67.1
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.0e-69 267.3 165 80.0
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.0e-61 239.2 219 60.3
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 5.7e-60 235.0 218 57.8
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.8e-58 229.9 220 59.5
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 6.5e-48 194.9 139 77.7
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 4.2e-47 192.2 171 57.3
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.2e-46 190.7 190 53.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.7e-43 180.3 150 57.3
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 5.3e-42 175.3 127 70.1
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 8.0e-30 134.8 105 68.6
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.5e-16 88.2 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 8.5e-16 88.2 59 72.9
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.7e-11 73.9 57 66.7
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 7.0e-10 68.6 55 63.6
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 5.0e-08 62.4 56 62.5
Potri.015G041900 Populus trichocarpa HOM05D000149 ORTHO05D000076 3.3e-07 59.7 68 54.4
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.6e-06 57.4 100 38.0


User provided reference genes

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