Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 3.8e-271 937.6 466 100.0
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.4e-232 808.1 466 86.7
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.6e-227 792.0 467 84.2
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 5.7e-227 790.8 467 84.4
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.2e-194 682.6 443 75.4
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 4.5e-192 674.9 444 74.5
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 2.3e-191 672.5 464 71.6
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 8.6e-191 670.6 452 72.8
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 1.0e-188 663.7 444 73.9
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 2.3e-188 662.5 445 74.8
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.3e-186 656.8 464 70.5
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.7e-186 656.4 443 72.2
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 2.4e-185 652.5 431 73.5
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.4e-185 652.5 446 72.4
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.4e-185 652.5 446 72.4
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.0e-183 647.1 436 70.9
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 1.2e-181 640.2 464 70.0
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 8.0e-181 637.5 443 72.0
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.5e-179 633.3 429 71.8
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.3e-178 630.2 439 70.4
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.3e-178 630.2 477 66.7
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 8.3e-178 627.5 365 84.7
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 9.2e-177 624.0 460 67.2
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 4.6e-176 621.7 454 68.1
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.3e-175 620.2 443 69.5
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.1e-173 612.8 431 66.8
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.1e-172 610.5 443 68.4
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.8e-172 609.8 460 66.1
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 6.8e-172 607.8 437 66.8
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 3.4e-171 605.5 436 69.0
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 7.6e-171 604.4 444 64.4
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 2.2e-170 602.8 451 67.0
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 2.9e-170 602.4 439 67.7
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.9e-169 599.7 431 65.4
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 2.4e-169 599.4 444 63.7
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 3.2e-169 599.0 429 69.0
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.1e-169 598.6 431 65.0
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 9.2e-169 597.4 431 65.0
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 9.2e-169 597.4 431 65.2
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 4.6e-168 595.1 429 68.3
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 8.6e-167 590.9 446 64.6
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 3.3e-166 589.0 441 65.1
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 4.7e-165 585.1 445 65.6
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 4.7e-165 585.1 458 63.3
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 3.1e-164 582.4 439 65.6
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 4.0e-164 582.0 461 64.6
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 2.6e-163 579.3 461 64.4
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 4.4e-163 578.6 460 63.3
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.9e-162 575.9 460 63.7
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 8.4e-162 574.3 444 64.4
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.9e-161 573.2 441 65.3
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 2.4e-161 572.8 463 63.3
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 7.1e-161 571.2 433 66.5
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 4.6e-160 568.5 471 60.7
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 7.8e-160 567.8 459 62.7
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 2.3e-159 566.2 464 63.6
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 3.0e-159 565.8 460 60.9
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 3.9e-159 565.5 463 62.2
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.6e-159 564.7 439 63.8
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 1.9e-158 563.1 444 63.1
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 5.6e-158 561.6 465 63.4
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 2.1e-157 559.7 465 63.2
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 3.6e-157 558.9 444 62.8
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 6.2e-157 558.1 463 63.5
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 6.2e-157 558.1 444 62.6
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 8.1e-157 557.8 470 61.1
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.8e-156 556.6 460 61.3
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 9.0e-156 554.3 463 61.3
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 3.4e-155 552.4 408 65.0
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 7.6e-155 551.2 463 62.0
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.7e-154 550.1 416 65.4
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.4e-153 547.0 494 59.5
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 2.7e-152 542.7 444 62.8
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 3.5e-152 542.3 398 67.3
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 4.6e-152 542.0 445 62.0
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.1e-151 538.5 435 61.8
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 6.9e-148 528.1 493 57.4
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 6.0e-144 515.0 423 60.0
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.4e-138 494.6 472 55.9
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 7.1e-137 491.5 453 54.3
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.5e-134 483.8 451 58.3
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 9.0e-132 474.6 432 54.9
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.9e-130 469.5 432 53.5
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 5.1e-127 458.8 443 53.5
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 8.7e-127 458.0 715 40.0
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 2.8e-125 453.0 308 70.1
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 2.4e-124 449.9 315 69.2
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 4.1e-124 449.1 314 70.4
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.5e-123 447.2 376 62.8
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 4.3e-118 429.1 454 47.1
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 2.7e-112 409.8 314 62.7
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.3e-109 401.0 320 63.8
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.1e-108 397.9 391 48.8
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 2.4e-108 396.7 309 62.1
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 3.5e-107 392.9 365 52.3
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 3.2e-105 386.3 315 61.6
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 7.2e-105 385.2 321 60.4
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 8.0e-104 381.7 315 60.3
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 4.8e-101 372.5 434 47.2
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.3e-98 364.4 413 45.5
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.2e-94 351.3 394 49.2
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.7e-91 340.1 222 74.8
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 9.2e-84 315.1 241 64.7
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.7e-82 310.8 349 49.9
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 4.7e-80 302.8 216 69.9
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 2.4e-76 290.4 216 63.0
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 5.8e-70 269.2 447 39.1
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.4e-68 264.6 218 61.5
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.7e-67 260.4 174 66.1
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 4.7e-56 223.0 212 54.7
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 4.7e-48 196.4 130 76.2
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 1.7e-45 188.0 231 42.0
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.9e-45 187.2 174 55.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 1.6e-43 181.4 135 65.2
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 5.1e-42 176.4 142 62.0
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.0e-38 164.5 136 58.8
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.3e-32 145.2 132 54.5
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 9.9e-30 135.6 96 69.8
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 5.1e-26 123.2 79 77.2
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 5.6e-25 119.8 134 46.3
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.6e-24 118.2 407 26.0
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.5e-22 111.7 398 26.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 1.6e-19 101.7 372 25.3
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.1e-19 101.3 76 67.1
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 5.1e-18 96.7 133 45.1
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 3.1e-15 87.4 63 71.4
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 2.7e-11 74.3 395 23.0


User provided reference genes

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