Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 0.0e+00 1749.6 1375 100.0
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 0.0e+00 1313.5 1384 79.4
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 3.7e-306 1055.4 1378 65.4
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.5e-287 991.5 1379 69.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.0e-284 984.2 1379 68.6
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.5e-283 979.5 1380 68.9
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.3e-266 921.8 1381 57.1
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.1e-261 905.2 1379 66.0
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.6e-256 890.6 1379 65.9
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.5e-254 882.1 1379 64.9
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.7e-247 860.5 1385 59.7
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.9e-240 835.5 1534 47.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 9.5e-238 828.2 1384 58.1
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.9e-236 821.6 1386 60.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 5.2e-228 795.8 1384 57.8
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.4e-219 766.1 1381 52.9
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.0e-215 753.4 2267 42.3
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.2e-213 748.0 1380 57.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-209 734.9 1383 50.8
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-209 734.9 1383 50.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.6e-208 731.1 1393 52.3
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 2.7e-208 730.3 1297 54.0
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.7e-207 727.6 1381 51.3
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 4.8e-205 719.5 1382 49.2
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.2e-203 714.9 1376 53.1
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 5.1e-199 699.5 1418 56.7
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 3.6e-197 693.3 1386 55.8
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 6.4e-194 682.6 1388 53.7
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 6.4e-194 682.6 1379 52.9
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 9.3e-193 678.7 1386 53.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 2.7e-192 677.2 1380 48.1
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.9e-190 671.0 1465 47.9
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 4.3e-190 669.8 1383 50.0
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.8e-188 664.5 1116 46.8
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 3.1e-188 663.7 1381 50.8
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.8e-186 656.8 1378 50.9
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 8.4e-186 655.6 1575 45.1
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 7.9e-184 649.0 1381 51.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 6.7e-183 646.0 1556 45.8
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.3e-182 643.3 1376 51.2
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 4.3e-182 643.3 1577 41.8
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.8e-181 639.8 1387 53.5
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.8e-178 630.2 1382 45.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 1.2e-176 625.2 1362 51.6
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.8e-175 621.3 1383 51.2
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-174 618.6 1380 47.3
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 1.6e-173 614.8 1381 47.6
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 2.8e-173 614.0 1627 39.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 5.3e-172 609.8 1382 46.2
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 9.0e-172 609.0 1382 52.8
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 3.8e-170 603.6 1376 50.4
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 6.1e-168 596.3 1580 41.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-167 595.1 1389 49.4
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.9e-167 593.6 1383 50.7
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.5e-163 581.6 1575 46.4
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.2e-162 577.8 1381 46.3
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 9.4e-161 572.4 1387 47.4
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.1e-160 571.2 1383 51.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.0e-159 567.4 1380 44.2
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 1.7e-157 561.6 625 59.2
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.8e-157 560.8 1380 43.6
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.9e-155 553.1 1388 43.9
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.2e-154 551.2 1386 52.0
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.9e-153 548.1 1396 48.3
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 4.0e-151 540.4 1382 50.8
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.0e-150 538.1 1338 44.8
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 4.4e-150 537.0 1527 44.1
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.8e-148 531.6 1403 44.6
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-146 525.4 1389 47.7
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-146 525.4 1389 47.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.5e-145 521.9 1640 38.8
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.5e-145 521.2 1383 46.9
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 2.7e-144 517.7 1574 45.8
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 8.0e-144 516.2 1376 43.8
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 8.3e-141 506.1 1382 42.1
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 5.4e-140 503.4 1564 40.9
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 3.2e-137 494.2 1392 47.8
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.3e-133 482.3 1385 48.1
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 5.4e-132 476.9 1387 39.6
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 2.9e-125 454.5 1383 45.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 8.6e-122 443.0 1120 35.2
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 3.3e-121 441.0 646 46.3
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 6.8e-119 433.3 1447 36.6
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.4e-116 425.6 1457 42.7
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.6e-112 412.1 1385 40.6
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 4.3e-105 387.5 1391 42.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 7.3e-105 386.7 1383 39.0
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.7e-99 368.2 621 44.8
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.4e-95 355.1 1382 42.6
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.9e-89 335.5 1933 30.9
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 8.1e-88 330.1 1325 34.6
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.0e-74 286.6 1379 46.6
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 6.9e-71 273.9 1284 37.6
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 4.5e-70 271.2 1380 35.6
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.9e-68 265.8 1377 45.0
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.6e-67 262.7 603 39.0
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.3e-65 254.6 372 48.4
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.1e-64 252.3 512 37.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 9.0e-63 246.9 433 40.6
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.2e-61 242.3 622 41.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.2e-59 236.5 281 52.3
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.1e-59 235.7 548 40.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 5.7e-57 227.6 240 57.1
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 2.4e-55 222.2 403 41.7
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.5e-54 219.5 278 50.4
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.6e-54 218.8 1410 35.5
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 5.9e-54 217.6 641 36.2
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.7e-54 217.2 334 44.3
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.4e-52 213.0 737 32.6
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.4e-52 213.0 491 45.6
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-52 213.0 1394 30.8
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.5e-49 203.0 1382 42.8
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.0e-49 202.6 270 53.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.2e-48 199.1 621 39.1
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 4.8e-48 198.0 1385 30.8
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-47 196.1 738 32.0
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 9.1e-47 193.7 851 28.9
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.5e-46 193.0 419 39.1
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.0e-45 188.0 621 33.5
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 8.5e-45 187.2 1389 36.8
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 6.1e-43 181.0 729 31.4
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 6.1e-43 181.0 1381 36.3
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.1e-41 176.8 349 40.7
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 2.0e-41 176.0 1338 24.1
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 7.0e-39 167.5 1386 35.7
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 3.5e-38 165.2 646 31.6
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 7.7e-38 164.1 1225 24.8
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-37 163.7 607 31.1
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 1.0e-37 163.7 224 48.2
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 2.9e-37 162.2 1465 41.0
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 2.7e-35 155.6 415 36.6
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.8e-34 152.9 641 30.9
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-34 152.9 349 38.7
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.8e-34 152.9 349 38.7
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 6.7e-34 151.0 304 43.1
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-32 146.7 350 38.3
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.2e-27 130.2 612 28.6
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.6e-27 129.8 411 31.9
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.0e-26 127.1 184 45.1
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-24 120.2 336 34.5
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.7e-24 119.8 339 37.5
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 1.7e-24 119.8 431 27.8
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.8e-24 118.2 648 33.2
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.4e-23 115.9 504 30.6
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 8.6e-21 107.5 338 31.4
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-20 107.1 322 32.9
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.2e-20 105.5 155 51.0
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 3.2e-20 105.5 425 25.9
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 9.5e-20 104.0 646 27.1
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 6.1e-19 101.3 194 38.7
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.0e-18 100.5 160 42.5
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.0e-18 100.5 160 42.5
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.4e-18 100.1 1446 23.9
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.8e-18 99.8 349 32.7
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.8e-18 99.8 121 59.5
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.8e-18 97.8 179 40.8
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 8.8e-18 97.4 1475 35.0
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 8.8e-18 97.4 786 25.2
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.6e-17 95.9 179 40.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 3.4e-17 95.5 183 38.3
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.7e-17 94.7 261 32.2
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.3e-16 93.6 261 31.8
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-16 93.2 469 29.2
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 2.7e-14 85.9 90 62.2
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 7.8e-14 84.3 658 28.1
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.1e-12 80.5 658 28.0
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 2.1e-11 76.3 110 50.0
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 3.6e-11 75.5 405 25.9
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 2.3e-10 72.8 352 29.0
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 4.0e-10 72.0 106 46.2
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.5e-09 70.1 613 23.3
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.2e-08 66.2 488 22.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 1.8e-07 63.2 53 66.0
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.1e-07 62.0 79 45.6
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 1.2e-06 60.5 84 44.0


User provided reference genes

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