Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.1e-201 706.4 354 100.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.6e-192 675.2 352 96.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.9e-192 674.1 352 95.7
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.8e-191 671.4 352 94.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.5e-179 630.6 327 96.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.6e-171 605.5 346 87.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.5e-171 604.0 351 84.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-170 603.2 345 87.0
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.1e-169 598.6 344 84.6
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 7.0e-169 597.4 355 83.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.6e-168 596.3 353 83.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.8e-168 594.0 345 84.6
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.3e-167 593.2 355 82.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.7e-167 592.8 353 83.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-166 589.7 347 85.3
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 3.3e-166 588.6 351 83.8
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 4.3e-166 588.2 345 83.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.6e-165 585.1 353 81.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 8.0e-165 583.9 353 81.9
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 8.0e-165 583.9 353 81.9
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.0e-164 583.6 313 93.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.8e-164 582.8 350 83.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-164 582.4 355 82.8
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.0e-164 582.0 350 83.7
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 6.8e-164 580.9 367 79.3
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 5.7e-163 577.8 343 84.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.7e-162 576.2 346 84.1
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.7e-162 576.2 356 80.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.9e-162 574.7 347 83.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 8.3e-162 573.9 349 82.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-161 573.2 352 82.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.1e-161 571.6 344 82.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.0e-161 570.9 357 80.4
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-160 568.9 352 81.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.5e-160 568.5 346 82.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.5e-158 563.1 345 80.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 3.3e-158 562.0 345 81.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.8e-157 558.9 351 80.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.8e-157 558.9 386 74.9
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.6e-157 558.5 357 79.6
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.4e-156 556.6 359 79.1
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.8e-156 554.3 323 85.8
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.0e-155 552.7 360 76.1
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 5.8e-155 551.2 351 78.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.7e-154 549.7 352 78.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.2e-154 549.3 356 78.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.4e-154 547.7 322 84.5
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-153 546.6 356 75.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.9e-153 546.2 349 76.8
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.1e-153 545.0 349 76.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.2e-152 543.5 366 75.1
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.5e-152 542.0 359 76.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.3e-151 540.0 350 77.4
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.3e-151 540.0 348 79.0
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.7e-151 539.7 358 75.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.7e-151 539.7 353 75.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 6.6e-151 537.7 348 78.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.9e-150 536.2 347 77.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 7.3e-150 534.3 327 81.0
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 9.5e-150 533.9 354 76.8
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.6e-149 531.9 354 76.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.7e-149 531.6 351 76.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.7e-149 531.6 354 76.6
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.2e-149 531.2 354 76.3
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 6.2e-149 531.2 348 77.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.1e-148 530.4 357 74.8
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 2.3e-148 529.3 377 72.1
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 8.9e-148 527.3 358 75.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.5e-147 526.6 322 80.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.6e-147 525.8 360 74.4
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.8e-147 524.6 332 78.9
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.2e-146 522.7 332 78.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.7e-146 521.9 333 77.5
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.3e-146 520.8 353 76.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.1e-145 518.5 346 75.4
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 9.2e-145 517.3 351 75.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.2e-144 516.9 330 76.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.6e-144 516.5 350 75.4
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.0e-144 514.6 405 66.7
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 7.8e-144 514.2 340 73.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 7.8e-144 514.2 333 76.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.8e-144 514.2 341 76.5
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.6e-143 510.8 330 76.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 8.6e-143 510.8 355 73.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.5e-142 510.0 325 78.8
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 2.5e-142 509.2 331 74.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-142 508.4 342 74.0
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-141 506.9 322 78.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-140 503.8 333 76.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.6e-139 499.2 357 69.7
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.4e-138 494.6 327 76.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-137 493.8 329 76.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 7.1e-137 491.1 344 74.4
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-136 490.3 328 75.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-136 490.3 331 74.6
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.1e-136 489.6 319 74.9
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.7e-136 489.2 326 72.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.5e-136 488.8 320 74.7
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.0e-136 488.0 319 74.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 7.8e-136 487.6 319 74.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.3e-135 486.9 320 74.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.3e-135 486.9 320 74.4
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-135 486.5 319 74.0
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.7e-135 486.5 319 74.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.9e-135 485.3 346 72.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 6.6e-135 484.6 319 74.3
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.7e-135 484.2 310 77.7
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.7e-135 484.2 348 72.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.1e-134 483.8 319 74.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.5e-134 482.6 363 70.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.3e-134 482.3 320 73.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 4.3e-134 481.9 320 73.8
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.3e-134 481.1 370 65.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.4e-132 476.9 347 70.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.8e-132 476.5 355 68.2
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.1e-132 475.7 340 71.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.1e-132 475.7 327 73.4
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.5e-131 473.4 305 78.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 4.4e-131 471.9 324 71.9
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.3e-130 470.3 308 76.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.8e-130 468.8 273 86.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.4e-129 466.8 271 85.6
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 9.3e-129 464.2 331 70.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.1e-128 463.0 318 71.1
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 3.5e-128 462.2 340 70.3
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-127 459.1 324 71.9
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 8.1e-125 451.1 350 67.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.9e-121 439.9 536 47.9
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.4e-121 439.5 266 83.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-120 437.2 284 78.9
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 8.2e-109 397.9 321 65.7
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 7.6e-99 364.8 351 54.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 2.9e-98 362.8 331 56.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.4e-97 360.5 226 79.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-95 353.6 242 71.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.2e-93 346.7 228 76.3
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.4e-92 344.0 206 83.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 5.3e-92 342.0 279 65.9
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.2e-88 330.9 290 57.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.2e-88 330.9 229 74.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.6e-86 323.2 202 81.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.3e-85 318.5 267 64.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.1e-84 315.8 188 84.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 5.7e-78 295.4 163 89.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.8e-69 265.8 375 42.4
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.7e-67 260.0 184 68.5
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.0e-63 246.5 185 70.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.4e-62 242.7 164 72.0
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-61 241.1 171 71.9
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.4e-60 236.9 142 79.6
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-58 228.4 211 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.4e-55 221.1 269 48.3
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 5.6e-49 199.1 329 41.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.4e-47 194.5 197 55.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 8.9e-39 165.2 116 73.3
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-32 143.7 152 50.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 4.9e-29 132.9 285 34.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.4e-28 131.3 258 36.8
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.7e-27 127.1 71 87.3
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.1e-25 121.7 380 31.1
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.4e-23 114.0 68 76.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-22 111.7 213 37.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.0e-18 98.6 57 82.5
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.3e-18 97.4 60 81.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 5.1e-18 96.3 91 54.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.1e-17 95.1 63 71.4
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.3e-13 81.6 148 37.2
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.6e-11 73.2 49 67.3
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.3e-08 65.1 60 58.3
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 1.2e-06 58.5 35 68.6
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 7.6e-06 55.8 51 52.9


User provided reference genes

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