Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.6e-79 299.3 143 100.0
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 2.7e-63 245.4 149 80.5
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.7e-60 236.1 142 79.6
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 1.6e-58 229.6 143 77.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.6e-58 229.6 119 89.1
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 4.5e-58 228.0 119 87.4
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 4.5e-58 228.0 119 87.4
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 1.0e-57 226.9 143 76.9
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.7e-57 226.1 149 73.2
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 1.1e-56 223.4 143 72.7
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.1e-56 223.4 143 72.7
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 1.5e-56 223.0 143 75.5
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 2.5e-56 222.2 143 74.1
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 2.5e-56 222.2 143 74.1
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 3.2e-56 221.9 122 82.0
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 7.2e-56 220.7 143 74.8
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.6e-55 219.5 143 76.2
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 2.1e-55 219.2 133 78.9
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 6.1e-55 217.6 136 74.3
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.0e-54 216.9 143 72.0
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 1.8e-54 216.1 131 76.3
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.8e-54 216.1 141 73.8
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 3.0e-54 215.3 137 76.6
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.0e-54 215.3 137 76.6
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.0e-54 215.3 137 76.6
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 3.0e-54 215.3 143 73.4
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 5.2e-54 214.5 128 76.6
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 6.7e-54 214.2 140 71.4
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 6.7e-54 214.2 139 71.9
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 6.7e-54 214.2 143 70.6
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 8.8e-54 213.8 139 71.9
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 8.8e-54 213.8 139 71.9
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 8.8e-54 213.8 139 71.9
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 8.8e-54 213.8 121 80.2
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 1.5e-53 213.0 141 71.6
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 1.5e-53 213.0 143 72.7
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 2.0e-53 212.6 141 70.2
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 2.6e-53 212.2 130 76.9
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 5.7e-53 211.1 122 75.4
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 5.7e-53 211.1 116 81.0
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.7e-52 209.5 139 71.2
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.7e-52 209.5 111 82.9
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.7e-52 209.5 113 82.3
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 2.2e-52 209.1 128 75.8
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 2.2e-52 209.1 148 70.9
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 2.2e-52 209.1 139 72.7
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 4.8e-52 208.0 137 70.8
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 4.8e-52 208.0 143 67.8
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.1e-51 206.8 124 76.6
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 1.8e-51 206.1 112 83.0
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 3.1e-51 205.3 111 82.9
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 3.1e-51 205.3 114 78.9
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 5.3e-51 204.5 140 68.6
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 7.0e-51 204.1 151 65.6
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 7.0e-51 204.1 144 68.1
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 7.0e-51 204.1 143 68.5
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 7.0e-51 204.1 129 75.2
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.2e-50 203.4 139 69.1
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 2.0e-50 202.6 174 59.2
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 2.7e-50 202.2 116 76.7
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 4.5e-50 201.4 117 77.8
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 5.9e-50 201.1 143 67.1
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 5.9e-50 201.1 108 80.6
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.0e-49 200.3 139 67.6
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.0e-49 200.3 120 77.5
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 1.7e-49 199.5 145 67.6
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 2.9e-49 198.7 144 64.6
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 8.5e-49 197.2 139 66.9
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 8.5e-49 197.2 141 65.2
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 8.5e-49 197.2 136 69.9
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 3.2e-48 195.3 110 77.3
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 9.4e-48 193.7 137 67.9
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 1.6e-47 193.0 143 63.6
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.6e-47 191.8 112 75.9
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 6.1e-47 191.0 111 78.4
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 8.0e-47 190.7 111 77.5
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.4e-46 189.9 122 73.0
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 1.8e-46 189.5 158 62.0
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 3.0e-46 188.7 115 70.4
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.2e-45 186.8 123 74.8
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 1.5e-45 186.4 149 63.8
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 2.0e-45 186.0 131 66.4
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 9.8e-45 183.7 151 57.0
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 6.3e-44 181.0 110 70.9
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 3.1e-43 178.7 139 60.4
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 5.4e-43 177.9 110 70.9
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 9.1e-43 177.2 110 70.0
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 9.1e-43 177.2 111 69.4
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 1.2e-42 176.8 119 67.2
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.6e-42 176.4 139 60.4
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 3.5e-42 175.3 108 69.4
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 4.5e-42 174.9 110 68.2
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 5.9e-42 174.5 137 59.9
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.0e-41 173.7 177 52.0
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 5.0e-41 171.4 109 67.9
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 1.5e-40 169.9 95 82.1
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.5e-40 169.9 95 83.2
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 9.5e-40 167.2 136 58.8
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 2.8e-39 165.6 141 58.9
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 5.2e-38 161.4 145 53.8
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 1.2e-37 160.2 116 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 4.4e-37 158.3 120 57.5
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 6.3e-36 154.5 113 59.3
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 1.0e-30 137.1 105 54.3
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.0e-30 137.1 102 58.8
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 9.2e-27 124.0 93 68.8
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 1.0e-25 120.6 121 46.3
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 5.0e-25 118.2 88 64.8
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 3.1e-22 109.0 96 51.0
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 7.0e-19 97.8 67 64.2
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 3.0e-17 92.4 78 56.4
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 6.6e-17 91.3 53 77.4
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 6.6e-17 91.3 51 78.4
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.5e-16 90.1 51 74.5
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 3.3e-16 89.0 51 76.5
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 5.6e-16 88.2 107 39.3
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 8.1e-15 84.3 50 74.0
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 1.1e-14 84.0 45 77.8
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 5.2e-14 81.6 48 75.0
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 1.2e-13 80.5 49 71.4
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 9.9e-13 77.4 48 70.8
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 9.5e-08 60.8 94 37.2
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 1.6e-07 60.1 77 32.5


User provided reference genes

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