Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 1.9e-99 365.9 192 100.0
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.4e-91 339.7 192 91.1
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 1.2e-90 336.7 192 91.1
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 5.6e-88 327.8 192 89.1
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 1.6e-87 326.2 192 85.9
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 1.5e-85 319.7 192 88.5
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 1.2e-77 293.5 192 79.2
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 3.4e-77 292.0 191 78.0
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 7.1e-75 284.3 192 78.1
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 7.1e-75 284.3 192 78.1
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 2.3e-73 279.3 191 75.9
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 2.8e-71 272.3 192 74.5
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 2.8e-71 272.3 192 77.6
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 1.8e-70 269.6 194 76.3
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 1.8e-70 269.6 196 74.0
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 3.1e-70 268.9 192 72.9
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 6.9e-70 267.7 190 73.2
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 1.2e-69 266.9 192 75.5
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 1.2e-69 266.9 192 75.5
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 1.2e-69 266.9 191 72.3
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 3.4e-69 265.4 191 74.3
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 3.4e-69 265.4 192 75.5
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 4.5e-69 265.0 190 74.2
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 6.5e-68 261.2 190 73.2
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 1.9e-67 259.6 191 72.3
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 2.5e-67 259.2 191 71.2
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 4.2e-67 258.5 193 71.5
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 4.2e-67 258.5 191 73.8
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 1.6e-66 256.5 196 69.9
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 4.6e-66 255.0 192 73.4
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 3.9e-65 251.9 191 71.2
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 3.3e-64 248.8 196 71.9
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 3.3e-64 248.8 191 71.2
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 3.7e-63 245.4 193 71.0
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 1.1e-62 243.8 241 58.1
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 9.0e-62 240.7 187 69.5
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 1.2e-61 240.4 184 73.9
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 1.5e-61 240.0 175 73.7
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 7.6e-61 237.7 189 69.8
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 6.5e-60 234.6 191 68.6
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.9e-59 233.0 188 67.0
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 5.5e-59 231.5 192 66.1
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 7.2e-59 231.1 192 65.6
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 9.4e-59 230.7 192 67.2
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.6e-58 229.9 192 65.6
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 4.6e-58 228.4 195 66.2
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 7.9e-58 227.6 192 65.6
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 3.0e-57 225.7 192 67.2
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 3.0e-57 225.7 193 67.9
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.9e-57 225.3 184 68.5
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 3.9e-57 225.3 194 64.4
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 5.1e-57 224.9 196 66.8
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 5.1e-57 224.9 191 66.5
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 5.1e-57 224.9 198 65.7
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 5.1e-57 224.9 194 64.4
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 6.7e-57 224.6 194 64.9
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 1.5e-56 223.4 196 67.3
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.9e-56 223.0 194 63.9
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 3.3e-56 222.2 196 63.8
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 5.7e-56 221.5 195 65.1
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 7.4e-56 221.1 197 64.0
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.7e-55 219.9 199 64.8
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 2.2e-55 219.5 191 66.0
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 2.8e-55 219.2 191 66.0
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 8.2e-55 217.6 199 64.3
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 1.4e-54 216.9 194 62.4
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 3.1e-54 215.7 191 65.4
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 5.3e-54 214.9 195 65.1
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 1.5e-53 213.4 192 60.9
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 1.5e-53 213.4 171 67.3
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 4.5e-53 211.8 196 62.8
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 4.5e-53 211.8 194 63.4
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 1.0e-52 210.7 192 58.3
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.0e-52 210.7 195 64.1
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 1.3e-52 210.3 191 62.8
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 1.7e-52 209.9 182 65.9
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 3.8e-52 208.8 192 60.9
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 1.1e-51 207.2 192 63.5
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 3.2e-51 205.7 192 55.7
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 7.2e-51 204.5 195 62.1
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 3.6e-50 202.2 198 59.6
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 1.8e-49 199.9 196 60.2
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 5.1e-49 198.4 192 59.4
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 6.7e-49 198.0 198 55.6
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 8.8e-49 197.6 206 60.2
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 1.1e-48 197.2 193 57.0
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 1.5e-48 196.8 147 72.1
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 3.7e-47 192.2 192 57.8
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 3.7e-47 192.2 193 60.1
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 3.1e-46 189.1 199 58.8
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 3.1e-46 189.1 199 58.8
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 4.1e-46 188.7 196 57.1
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 5.9e-45 184.9 150 68.0
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 1.1e-43 180.6 197 56.9
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 3.2e-43 179.1 193 53.4
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 9.4e-43 177.6 205 48.3
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 1.6e-42 176.8 177 55.9
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 1.6e-42 176.8 191 55.0
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 8.0e-42 174.5 195 54.9
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 8.0e-42 174.5 216 53.7
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 1.0e-41 174.1 192 52.6
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 2.6e-40 169.5 189 49.7
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 3.1e-38 162.5 192 49.5
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 3.1e-38 162.5 221 46.2
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 5.3e-38 161.8 203 46.8
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.2e-37 160.6 147 63.9
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 1.6e-37 160.2 188 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 7.7e-37 157.9 188 47.3
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 3.8e-36 155.6 192 45.3
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 3.8e-36 155.6 192 45.3
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 1.1e-35 154.1 110 73.6
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 1.9e-35 153.3 140 62.9
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 1.2e-34 150.6 187 48.1
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 4.7e-34 148.7 192 44.8
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 1.8e-33 146.7 150 61.3
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 8.8e-33 144.4 148 56.8
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 5.7e-32 141.7 189 43.9
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 4.1e-30 135.6 147 53.1
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 5.3e-30 135.2 89 77.5
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 1.0e-28 131.0 170 45.9
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 8.8e-25 117.9 158 48.1
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 8.8e-25 117.9 207 40.6
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 1.5e-24 117.1 84 70.2
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 1.4e-22 110.5 74 79.7
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 5.4e-22 108.6 81 70.4
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 3.5e-21 105.9 83 72.3
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 7.7e-21 104.8 83 71.1
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 5.0e-20 102.1 83 69.9
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 7.2e-19 98.2 59 84.7
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 1.2e-18 97.4 89 60.7
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.4e-17 94.0 89 53.9
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 1.5e-16 90.5 161 39.8
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 9.8e-16 87.8 91 53.8
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 2.2e-15 86.7 138 43.5
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 3.7e-15 85.9 99 54.5
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 1.1e-14 84.3 202 37.1
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 5.9e-13 78.6 103 53.4
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 1.9e-11 73.6 49 71.4
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 5.6e-11 72.0 181 30.9
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 7.3e-11 71.6 57 70.2
CiPaw.15G164900 Carya illinoinensis HOM05D005762 ORTHO05D006823 9.5e-11 71.2 88 51.1


User provided reference genes

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