Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 2503.0 1453 100.0
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1817.0 1477 76.0
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1229.2 1492 55.2
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1179.1 1497 54.9
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1178.7 1493 54.7
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1177.2 1530 53.5
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1161.4 1490 53.2
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1156.7 1574 51.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1156.4 1491 53.1
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1153.7 1469 53.6
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1141.7 1497 53.5
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1116.7 1492 52.4
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1097.4 1442 52.9
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 1086.2 1477 51.3
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 0.0e+00 1085.5 1478 52.1
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1081.6 1434 52.1
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1080.9 1485 51.0
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1079.7 1513 51.2
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1077.8 1482 50.4
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1076.6 1479 50.9
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 1076.6 1474 51.4
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 9.9e-312 1074.3 1486 51.8
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 2.0e-311 1072.8 1486 51.6
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 3.4e-310 1068.9 1572 49.8
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 2.3e-306 1056.2 1507 49.0
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 2.5e-305 1052.7 1502 50.1
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 5.4e-300 1035.0 1461 52.6
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 4.6e-299 1031.9 1490 52.1
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.9e-297 1026.5 1468 52.5
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 5.6e-297 1025.0 1538 48.0
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 1.4e-292 1010.4 1503 49.6
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 3.4e-286 989.2 1518 48.2
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.9e-284 983.4 1487 49.5
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.8e-280 969.5 1497 48.3
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.2e-280 968.4 1476 46.1
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 2.4e-279 966.5 1555 47.2
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 9.0e-279 964.5 1491 48.7
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 5.8e-278 961.8 1476 48.3
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 8.4e-277 958.0 1542 46.4
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.0e-274 951.0 1580 45.9
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 4.8e-272 942.2 1482 46.7
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 1.1e-271 941.0 1509 46.9
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 1.4e-271 940.6 1483 46.9
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 3.1e-271 939.5 1540 46.8
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 9.0e-271 937.9 1549 46.4
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 5.8e-270 935.3 1557 46.8
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 9.9e-270 934.5 1454 48.2
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.9e-268 930.2 1549 45.4
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 3.3e-265 919.5 1460 47.3
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.1e-263 914.4 1560 45.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.4e-263 914.1 1492 46.9
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 1.3e-261 907.5 1318 49.3
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.9e-261 905.6 1580 45.9
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 2.7e-259 899.8 1520 44.9
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 1.9e-257 893.6 1470 46.9
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.1e-255 887.9 1536 47.1
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 6.1e-251 872.1 1462 43.3
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 4.8e-248 862.4 1542 44.6
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 5.3e-247 859.0 1385 47.4
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 5.9e-246 855.5 1490 46.6
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 7.7e-246 855.1 1519 44.5
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 6.1e-243 845.5 727 67.4
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 2.8e-240 836.6 1495 44.3
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 8.2e-240 835.1 1481 46.2
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 6.9e-239 832.0 1737 40.4
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 2.5e-236 823.5 1516 44.1
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.1e-235 820.5 1470 45.9
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 2.8e-232 810.1 1481 44.6
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 1.4e-231 807.7 1500 44.9
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 2.4e-231 807.0 1514 45.9
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 3.1e-231 806.6 1495 44.7
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 3.6e-227 793.1 1610 41.9
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 3.6e-227 793.1 1194 47.5
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.5e-225 787.7 1503 42.8
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 7.0e-223 778.9 1510 44.4
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.6e-222 777.7 1474 44.8
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.7e-219 766.1 1483 43.2
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 4.4e-217 759.6 1488 42.7
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 2.9e-213 746.9 1492 42.8
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 2.5e-212 743.8 1508 43.7
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 4.2e-212 743.0 1298 42.6
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 7.0e-207 725.7 1453 43.6
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 2.0e-206 724.2 1477 44.6
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 5.0e-205 719.5 1475 42.2
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.2e-203 714.9 1476 42.3
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 3.0e-202 710.3 1475 42.1
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 4.0e-202 709.9 1472 41.4
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 4.0e-202 709.9 1472 41.4
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 1.3e-200 704.9 1468 42.7
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 3.5e-198 696.8 1479 41.2
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 4.7e-195 686.4 1473 40.7
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.8e-190 669.1 1079 43.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 7.1e-183 646.0 1480 38.5
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 3.3e-180 637.1 1537 38.3
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 3.1e-178 630.6 1450 39.9
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.3e-164 583.9 586 61.9
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 4.2e-159 567.0 1470 38.2
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 3.5e-158 563.9 1220 36.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 5.6e-148 530.0 1243 39.3
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 3.7e-147 527.3 1501 35.8
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 4.5e-145 520.4 1420 32.8
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 1.0e-136 492.7 1322 36.0
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 2.3e-133 481.5 833 44.9
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 1.5e-132 478.8 1501 36.1
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.4e-124 449.9 608 46.4
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 3.8e-112 411.0 1340 32.5
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 3.4e-92 344.7 1424 32.5
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.2e-83 315.5 829 38.5
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 5.6e-63 247.7 477 46.3
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 5.8e-60 237.7 699 32.6
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 2.2e-59 235.7 1521 25.2
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 9.2e-58 230.3 276 40.9
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.1e-55 223.4 1212 28.5
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 1.9e-55 222.6 1539 25.5
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 4.4e-52 211.5 1385 25.4
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 4.9e-51 208.0 257 48.2
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 4.0e-37 161.8 173 50.3
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 2.0e-36 159.5 459 39.9
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 2.7e-33 149.1 297 40.7
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 5.6e-31 141.4 92 70.7
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 6.2e-30 137.9 239 43.9
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 9.0e-29 134.0 133 60.9
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 9.0e-29 134.0 477 40.5
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 2.6e-28 132.5 566 30.6
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.1e-21 110.5 60 88.3
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 6.9e-21 107.8 324 45.1
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 2.9e-19 102.4 167 45.5
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 2.5e-18 99.4 118 49.2
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 2.5e-18 99.4 130 49.2
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 6.1e-17 94.7 233 39.9
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 6.1e-17 94.7 252 36.9
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 7.9e-17 94.4 69 60.9
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 1.0e-16 94.0 58 70.7
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 4.3e-15 88.6 523 33.1
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 2.6e-12 79.3 78 47.4
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 4.5e-12 78.6 120 45.0
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.3e-11 77.0 50 68.0
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 1.7e-11 76.6 154 38.3
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 2.9e-11 75.9 61 62.3
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.4e-10 73.6 50 64.0
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 1.4e-10 73.6 359 30.6
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.9e-10 73.2 67 58.2
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 4.2e-10 72.0 310 22.6
Actinidia04098 Actinidia chinensis HOM05D004594 ORTHO05D005225 1.4e-08 67.0 242 29.8
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 1.8e-08 66.6 57 52.6
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 8.8e-08 64.3 40 70.0
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.8e-08 64.3 103 35.9
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 2.2e-06 59.7 53 56.6
QL03p068157 Quercus lobata HOM05D004594 ORTHO05D005225 2.2e-06 59.7 175 34.9
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 2.2e-06 59.7 89 36.0
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 2.8e-06 59.3 93 38.7
QL03p068462 Quercus lobata HOM05D000622 ORTHO05D000475 4.8e-06 58.5 40 70.0


User provided reference genes

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