Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.2e-310 1069.3 684 100.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-257 892.9 700 85.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.8e-192 676.8 537 68.5
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 3.9e-192 675.6 538 69.5
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.9e-189 664.8 536 69.4
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.5e-188 663.7 537 68.2
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 1.9e-186 656.8 536 68.3
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 5.5e-186 655.2 535 68.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.3e-184 650.6 536 68.1
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.8e-184 650.2 505 70.9
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.3e-184 649.8 531 65.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.3e-184 649.8 716 67.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.1e-184 648.7 515 69.1
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 8.7e-184 647.9 516 68.8
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.5e-183 647.1 523 68.1
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.9e-183 646.7 716 61.7
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 8.2e-182 641.3 704 66.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.1e-181 641.0 694 69.2
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.4e-181 640.6 716 62.3
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.4e-181 640.6 711 62.7
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.1e-181 639.4 531 64.8
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 9.0e-181 637.9 490 68.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-180 637.5 513 67.8
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 3.4e-180 636.0 706 62.9
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 3.4e-180 636.0 504 68.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.8e-179 632.5 534 66.7
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.8e-179 632.5 706 62.5
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.9e-178 630.2 531 63.8
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.5e-178 629.8 504 67.5
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.2e-177 627.5 505 67.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-177 627.5 515 65.2
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.6e-177 627.1 504 67.9
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 6.1e-177 625.2 706 62.0
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.8e-176 623.6 707 60.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.0e-176 622.9 507 65.3
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.9e-176 622.5 708 62.1
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 8.8e-176 621.3 498 67.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.0e-175 620.2 503 68.2
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 3.3e-175 619.4 537 66.1
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 3.3e-175 619.4 506 67.0
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 7.4e-175 618.2 722 67.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 9.7e-175 617.8 524 65.8
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 4.5e-172 609.0 527 64.9
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 4.5e-172 609.0 521 64.7
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.7e-171 607.1 527 64.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.7e-171 607.1 520 66.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 6.5e-171 605.1 527 65.1
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.2e-170 602.8 504 65.9
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.2e-170 601.7 466 69.3
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.0e-168 597.8 534 63.5
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 6.3e-166 588.6 532 62.6
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 8.2e-166 588.2 505 65.7
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 3.1e-165 586.3 518 63.7
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.1e-165 585.9 454 66.7
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 3.5e-164 582.8 421 70.5
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 5.9e-164 582.0 520 62.3
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.3e-163 580.9 524 62.8
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.2e-163 580.1 514 63.6
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 2.2e-163 580.1 520 62.1
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 5.0e-163 578.9 517 63.1
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 6.5e-163 578.6 519 63.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.1e-162 577.8 517 63.6
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 3.2e-162 576.2 583 59.3
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.1e-161 573.5 507 63.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.6e-159 566.6 518 62.9
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.3e-158 564.3 515 61.6
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.2e-158 563.5 408 69.6
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 8.2e-158 561.6 418 67.5
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.7e-156 556.6 444 65.3
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.7e-156 556.6 553 59.0
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 4.5e-156 555.8 510 63.5
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 5.9e-156 555.4 490 64.3
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.9e-155 553.1 522 58.6
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 5.0e-155 552.4 517 60.2
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.5e-154 550.1 508 62.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 5.5e-154 548.9 536 59.3
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 8.0e-153 545.0 532 59.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.0e-152 543.1 453 64.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.5e-151 540.8 509 58.9
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 9.8e-151 538.1 536 59.0
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 2.2e-150 537.0 521 57.6
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.8e-150 536.6 474 60.8
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.6e-148 530.8 420 64.0
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.3e-147 527.7 519 57.2
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.7e-147 527.3 490 60.2
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.8e-147 526.2 494 60.7
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 9.4e-146 521.5 421 63.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.1e-145 518.8 393 67.4
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 8.0e-145 518.5 511 56.0
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 1.0e-144 518.1 447 61.1
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.0e-144 518.1 467 60.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 8.8e-144 515.0 488 59.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.7e-142 510.8 517 56.1
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 3.1e-141 506.5 378 66.9
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 7.0e-141 505.4 452 61.1
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 5.9e-140 502.3 460 60.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.6e-137 494.2 522 55.2
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.8e-136 488.8 519 56.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.2e-135 488.0 505 55.4
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 5.7e-135 485.7 529 53.1
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 6.4e-134 482.3 519 55.7
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 5.4e-133 479.2 532 53.8
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.6e-132 477.6 452 57.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.0e-131 474.9 505 55.8
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.1e-130 471.5 473 56.2
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.8e-129 466.8 375 70.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 4.7e-129 466.1 444 56.8
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.6e-127 460.3 483 53.4
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.9e-123 446.4 426 56.6
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.3e-112 410.6 430 53.5
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 4.4e-111 406.4 353 66.3
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.1e-109 401.7 377 57.0
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.0e-107 395.2 328 61.3
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.2e-101 373.6 492 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.9e-99 366.7 417 49.2
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.9e-99 366.7 346 56.6
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 9.0e-96 355.5 359 53.8
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.2e-95 355.1 445 47.0
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 5.1e-91 339.7 351 53.3
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 5.1e-91 339.7 455 48.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.9e-85 321.2 307 61.6
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.5e-82 311.6 213 72.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.5e-82 311.6 434 44.0
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.0e-75 288.9 452 66.2
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.7e-70 271.6 361 43.2
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 5.0e-70 270.0 210 64.8
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 4.6e-68 263.5 501 39.5
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.3e-65 255.4 394 41.9
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.2e-65 254.6 173 72.3
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 3.3e-42 177.6 206 46.6
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 7.0e-40 169.9 190 50.0
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 7.2e-37 159.8 178 57.9
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.2e-35 153.7 517 27.5
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 7.7e-31 139.8 169 46.2
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.9e-30 137.9 119 59.7
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 6.5e-30 136.7 119 59.7
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 5.0e-22 110.5 115 56.5
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 2.5e-21 108.2 95 56.8
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 5.6e-21 107.1 236 35.2
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 5.6e-21 107.1 352 26.7
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 8.0e-20 103.2 87 60.9
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.0e-19 101.3 116 50.0
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-18 99.4 125 60.8
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 7.8e-15 86.7 112 62.5
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.9e-13 82.0 164 36.0
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.6e-13 80.5 106 48.1
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.6e-10 71.6 122 37.7
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.9e-08 65.5 44 65.9
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 4.6e-07 60.8 106 37.7
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 2.3e-06 58.5 113 34.5


User provided reference genes

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