Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 2514.2 1286 100.0
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 2228.8 1322 85.9
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1779.2 1298 68.9
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1771.1 1300 68.6
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1768.4 1286 69.5
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1767.7 1297 67.2
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1764.6 1294 68.9
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1761.9 1297 68.9
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1734.5 1301 68.3
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1734.2 1294 68.4
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1726.1 1323 66.6
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1713.0 1294 67.3
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1711.4 1295 67.4
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1702.2 1304 67.2
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1687.9 1292 66.4
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1687.9 1298 66.5
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1681.0 1237 70.0
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1679.8 1293 66.7
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1668.3 1287 66.7
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1667.5 1311 65.2
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1659.4 1311 65.2
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1657.1 1293 66.2
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1656.0 1294 66.2
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1651.0 1262 66.2
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1636.7 1188 69.9
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1634.8 1296 65.2
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1634.0 1295 64.5
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1623.6 1420 60.8
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1623.2 1300 63.8
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1622.8 1387 60.3
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1622.4 1294 63.4
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1619.0 1293 63.9
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1618.2 1289 63.6
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1616.7 1296 63.3
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1614.4 1294 63.6
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1610.1 1297 63.4
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1609.7 1299 63.5
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1608.6 1294 62.8
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1608.2 1356 61.7
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1603.2 1290 63.3
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1602.8 1288 63.7
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1594.3 1322 62.1
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1593.9 1292 62.5
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1592.0 1299 63.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1582.0 1292 63.2
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1580.1 1292 62.8
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1567.7 1301 62.2
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1565.1 1308 60.9
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1564.3 1313 61.5
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1541.2 1315 60.8
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1540.8 1308 61.4
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1529.6 1284 60.4
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1525.8 1284 60.3
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1519.6 1294 60.5
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1519.6 1296 60.6
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1509.2 1288 60.2
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1291 59.9
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1504.2 1295 60.4
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1503.8 1290 61.0
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1503.8 1112 69.1
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1503.0 1290 60.2
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1493.4 1291 60.7
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1491.1 1290 60.2
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1489.9 1291 60.6
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1487.2 1295 58.9
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1487.2 1290 60.3
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1487.2 1297 59.5
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1486.5 1289 60.1
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1481.1 1302 59.7
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1473.4 1292 59.2
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1473.0 1292 59.2
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1470.7 1112 67.4
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1469.1 1294 59.0
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1467.2 1325 58.6
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1463.0 1363 55.8
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1453.0 1286 58.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1444.1 1286 59.3
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1434.9 1311 58.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1434.5 1093 66.6
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1432.9 1089 65.9
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1431.0 1310 57.3
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1431.0 1305 57.9
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1413.7 1292 58.0
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1408.7 1287 57.3
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1407.9 1391 55.7
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1393.6 1121 64.8
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1387.5 1157 61.0
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1384.4 1295 55.0
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1382.1 1112 62.9
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1377.5 1160 62.6
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1363.2 1300 56.5
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1361.3 1080 63.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1357.8 1268 55.8
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1341.6 1301 55.1
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1310.8 1293 53.3
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1294.3 1204 56.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1277.3 1335 52.1
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1273.1 1265 52.7
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1251.1 1293 50.2
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1241.5 1285 51.5
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1234.9 1296 51.9
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1155.6 1393 47.5
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.3e-277 959.1 919 53.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 9.1e-275 951.0 648 72.4
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.8e-265 919.1 748 62.6
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.6e-261 906.4 844 55.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.7e-260 902.5 1347 39.6
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 2.4e-259 899.8 1369 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.4e-243 846.7 1179 41.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.7e-212 744.2 1287 36.5
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.4e-203 714.5 935 43.9
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 6.4e-188 662.5 570 58.9
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 2.6e-157 560.8 379 75.2
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 7.7e-157 559.3 659 45.5
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 9.7e-152 542.3 349 77.9
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 1.7e-151 541.6 505 61.0
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 4.1e-142 510.4 463 56.6
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.8e-127 461.1 289 75.4
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.9e-107 395.2 222 80.6
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 9.6e-91 339.7 1080 26.0
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.1e-90 338.6 214 78.5
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.4e-89 335.1 426 43.2
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.0e-89 334.3 211 77.7
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 8.4e-87 326.6 417 43.6
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 7.8e-85 320.1 215 72.6
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 8.7e-76 290.0 287 54.7
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.6e-74 285.8 1048 25.4
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 6.5e-71 273.9 163 75.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.4e-64 251.5 146 75.3
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 3.5e-61 241.5 695 28.1
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.2e-58 232.3 189 57.1
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 4.3e-51 208.0 168 59.5
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 8.2e-50 203.8 217 47.9
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 7.9e-45 187.2 983 22.8
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.1e-41 173.7 209 45.0
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.2e-40 173.3 153 60.1
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.0e-39 170.2 111 71.2
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.7e-37 162.2 143 58.7
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.8e-36 159.5 144 60.4
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 3.7e-34 151.8 120 65.8
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.7e-34 151.8 121 57.9
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.2e-32 146.7 382 33.2
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.5e-32 145.2 110 68.2
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.5e-32 144.8 116 73.3
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.5e-30 139.8 192 42.7
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 4.7e-29 134.8 113 74.3
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.2e-23 115.9 100 57.0
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 8.5e-23 114.0 209 35.9
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.5e-23 114.0 238 34.5
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.3e-20 105.9 87 60.9
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.8e-18 99.0 75 60.0
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.4e-17 96.7 83 62.7
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 6.6e-15 87.8 65 60.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 1.2e-13 83.6 57 66.7
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.6e-13 82.0 205 32.2
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 5.7e-11 74.7 100 45.0
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 2.0e-08 66.2 76 68.4
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 3.5e-08 65.5 45 68.9
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.5e-06 59.3 41 63.4
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 5.6e-06 58.2 73 60.3


User provided reference genes

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