Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.9e-53 212.2 104 100.0
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 7.6e-23 110.5 96 64.6
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.1e-18 96.7 96 54.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.9e-18 95.9 96 53.1
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.7e-18 93.6 96 52.1
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-17 92.8 96 53.1
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.6e-17 92.8 96 53.1
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.6e-17 92.8 96 55.2
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.6e-17 92.8 96 52.1
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.8e-17 92.0 96 50.0
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.8e-17 92.0 96 54.2
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 4.8e-17 91.3 96 51.0
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.8e-17 91.3 96 52.1
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.8e-17 91.3 96 51.0
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-17 90.9 96 52.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.4e-16 89.7 96 51.0
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.4e-16 89.7 96 51.0
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.8e-16 89.4 96 50.0
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.4e-16 89.0 95 51.6
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.1e-16 88.6 96 50.0
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.1e-16 88.6 96 47.9
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 4.1e-16 88.2 96 51.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 4.1e-16 88.2 96 51.0
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 5.3e-16 87.8 94 51.1
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 5.3e-16 87.8 96 51.0
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 5.3e-16 87.8 96 50.0
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 6.9e-16 87.4 96 52.1
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 6.9e-16 87.4 99 50.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 6.9e-16 87.4 113 41.6
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 9.0e-16 87.0 96 50.0
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.2e-15 86.7 96 51.0
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.2e-15 86.7 96 49.0
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.2e-15 86.7 96 52.1
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 1.2e-15 86.7 96 51.0
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 2.0e-15 85.9 96 51.0
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.0e-15 85.9 96 50.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.0e-15 85.9 113 43.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 2.0e-15 85.9 108 44.4
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 4.5e-15 84.7 96 50.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 5.9e-15 84.3 96 51.0
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 5.9e-15 84.3 96 46.9
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 5.9e-15 84.3 97 48.5
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 5.9e-15 84.3 113 42.5
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 5.9e-15 84.3 96 46.9
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.0e-14 83.6 96 50.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.0e-14 83.6 96 46.9
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.3e-14 83.2 96 45.8
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.7e-14 82.8 96 51.0
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.7e-14 82.8 96 47.9
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 2.2e-14 82.4 96 46.9
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 2.2e-14 82.4 112 42.0
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.9e-14 82.0 96 49.0
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.9e-14 82.0 96 49.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.9e-14 82.0 96 49.0
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.9e-14 82.0 96 51.0
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.8e-14 81.6 96 47.9
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 3.8e-14 81.6 96 50.0
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 5.0e-14 81.3 96 49.0
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 5.0e-14 81.3 96 50.0
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 5.0e-14 81.3 96 51.0
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 6.5e-14 80.9 99 49.5
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 6.5e-14 80.9 96 47.9
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.5e-14 80.9 96 45.8
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 6.5e-14 80.9 112 41.1
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 8.5e-14 80.5 113 43.4
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.1e-13 80.1 96 46.9
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.1e-13 80.1 96 47.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.9e-13 79.3 96 46.9
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.9e-13 79.3 96 45.8
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.9e-13 79.3 94 45.7
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-13 79.0 96 45.8
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.5e-13 79.0 96 45.8
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.5e-13 79.0 96 47.9
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.5e-13 79.0 113 40.7
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 3.2e-13 78.6 96 46.9
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 3.2e-13 78.6 96 46.9
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.2e-13 78.6 96 46.9
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 3.2e-13 78.6 96 46.9
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.2e-13 78.2 96 46.9
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 4.2e-13 78.2 96 45.8
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.2e-13 78.2 96 44.8
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 4.2e-13 78.2 109 45.0
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 7.2e-13 77.4 96 44.8
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 9.4e-13 77.0 94 43.6
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 9.4e-13 77.0 96 46.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 9.4e-13 77.0 96 45.8
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 9.4e-13 77.0 113 42.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.2e-12 76.6 113 41.6
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.6e-12 76.3 133 36.8
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.1e-12 75.9 103 43.7
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.1e-12 75.9 96 44.8
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 6.1e-12 74.3 96 44.8
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 7.9e-12 73.9 109 43.1
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.0e-11 73.6 96 44.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.0e-11 73.6 94 43.6
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.0e-11 73.6 96 44.8
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.0e-11 73.6 96 44.8
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.0e-11 73.6 94 43.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.0e-11 73.6 113 39.8
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 2.3e-11 72.4 96 45.8
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.3e-11 72.4 96 42.7
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.1e-11 71.2 95 42.1
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 6.7e-11 70.9 96 40.6
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 6.7e-11 70.9 113 38.1
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 8.8e-11 70.5 96 38.5
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.5e-10 69.7 95 42.1
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 5.7e-10 67.8 46 67.4
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 7.4e-10 67.4 46 67.4
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.3e-09 66.6 97 41.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.7e-09 66.2 48 60.4
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.8e-09 64.7 81 46.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.4e-08 63.2 95 40.0
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.1e-08 62.0 97 37.1
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.1e-08 61.6 97 39.2
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 4.1e-08 61.6 31 83.9
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 6.9e-08 60.8 100 37.0
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 9.1e-08 60.5 96 36.5
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 9.1e-08 60.5 113 36.3
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.2e-07 60.1 37 70.3
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.6e-07 58.9 96 37.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.0e-06 57.0 33 75.8
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-06 55.5 33 69.7


User provided reference genes

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