Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.8e-305 1050.0 517 100.0
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.4e-279 965.7 525 90.7
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.1e-274 948.0 520 89.8
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 7.6e-273 943.3 521 89.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.7e-272 942.2 525 88.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 2.2e-272 941.8 520 89.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 2.2e-272 941.8 521 89.1
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.8e-272 941.0 512 90.4
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.8e-272 941.0 512 90.4
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 6.4e-272 940.3 521 89.3
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.1e-271 939.5 520 89.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.4e-271 939.1 514 90.1
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 1.9e-271 938.7 518 89.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.2e-271 937.9 520 88.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 4.2e-271 937.6 522 88.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 7.1e-271 936.8 517 88.8
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 7.1e-271 936.8 525 88.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 7.1e-271 936.8 514 89.9
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 9.3e-271 936.4 525 87.6
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-270 936.0 517 88.0
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.2e-270 936.0 529 87.7
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.6e-270 935.6 521 88.7
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.6e-270 935.6 521 88.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.7e-270 934.9 521 88.5
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.5e-270 934.5 521 88.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.3e-269 932.6 524 87.6
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.3e-269 932.6 521 88.3
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.3e-269 932.6 518 88.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.8e-269 932.2 519 88.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.8e-269 932.2 521 88.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.3e-269 931.8 516 88.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.3e-269 931.8 524 87.2
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 3.9e-269 931.0 515 89.1
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 6.7e-269 930.2 532 85.5
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 8.7e-269 929.9 514 89.3
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.9e-268 928.7 520 87.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 2.5e-268 928.3 502 90.4
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.3e-268 927.9 525 86.9
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 5.6e-268 927.2 524 87.0
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 5.6e-268 927.2 521 87.9
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 7.4e-268 926.8 519 87.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.6e-267 925.6 504 90.7
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 2.8e-267 924.9 524 86.6
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 2.8e-267 924.9 524 86.6
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 86.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 86.8
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.8e-267 924.1 529 87.0
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 6.2e-267 923.7 526 86.3
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 6.2e-267 923.7 527 87.1
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.2e-267 923.7 523 87.2
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 8.1e-267 923.3 521 86.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 1.1e-266 922.9 528 85.8
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 2.4e-266 921.8 516 87.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 4.0e-266 921.0 554 83.4
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 5.3e-266 920.6 530 86.4
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.2e-265 919.5 527 86.7
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.2e-265 919.5 519 87.3
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.5e-265 919.1 519 86.9
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.0e-265 918.7 564 82.6
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 2.0e-265 918.7 503 88.7
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 2.6e-265 918.3 527 85.6
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 2.6e-265 918.3 504 89.5
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.5e-265 917.5 511 87.7
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.3e-264 916.0 527 85.6
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.7e-264 915.6 518 86.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.7e-264 915.6 518 86.3
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 3.8e-264 914.4 522 84.9
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.8e-264 914.4 521 86.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.9e-264 914.1 518 86.1
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.9e-263 912.1 529 85.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.2e-263 911.4 521 86.4
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.2e-263 911.4 526 84.8
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.5e-262 907.9 517 86.8
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 4.6e-262 907.5 517 86.7
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.0e-262 907.1 516 85.1
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 7.9e-262 906.7 521 86.0
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 1.8e-261 905.6 522 83.9
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.8e-261 905.6 521 86.0
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.0e-261 904.8 514 85.4
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 3.0e-261 904.8 513 86.5
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 8.7e-261 903.3 499 87.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.5e-260 902.5 526 84.2
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.9e-260 902.1 512 86.7
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 2.5e-260 901.7 523 86.2
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.3e-260 901.4 518 84.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 4.3e-260 901.0 522 84.3
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.8e-259 898.3 504 87.1
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.4e-258 896.0 510 85.7
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.3e-258 894.0 501 85.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 9.0e-258 893.3 501 86.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 7.6e-257 890.2 522 82.8
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 7.6e-257 890.2 519 84.2
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.8e-256 887.9 525 82.7
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.5e-256 886.7 546 80.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 7.2e-255 883.6 532 82.1
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.6e-254 882.5 524 81.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 4.6e-254 880.9 522 83.1
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.1e-252 876.3 522 82.4
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.9e-252 875.5 518 82.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.9e-252 875.5 518 82.8
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 4.3e-252 874.4 528 81.2
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 7.7e-249 863.6 511 81.2
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.2e-247 858.2 503 80.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.3e-245 852.0 514 78.6
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 4.1e-242 841.3 528 76.3
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 2.0e-241 839.0 514 80.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 5.0e-240 834.3 517 78.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 7.4e-236 820.5 564 73.4
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 8.2e-235 817.0 528 74.8
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 4.1e-226 788.1 521 73.1
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.9e-225 784.3 473 84.1
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 6.5e-224 780.8 500 75.2
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 5.5e-223 777.7 506 72.5
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 6.1e-222 774.2 499 73.9
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.0e-220 769.2 524 76.1
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 9.8e-220 766.9 502 71.3
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.7e-219 766.1 505 70.9
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.8e-218 762.7 505 70.3
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.4e-218 761.1 525 75.4
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.1e-214 749.2 412 88.3
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.4e-213 746.5 518 70.1
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.8e-213 746.1 502 69.1
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 6.6e-208 727.6 397 90.9
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.3e-200 703.4 490 67.3
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 6.8e-197 691.0 522 70.1
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.9e-192 675.2 379 88.4
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 2.5e-191 672.5 535 60.6
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 4.1e-186 655.2 504 63.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 8.9e-181 637.5 419 79.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 9.9e-180 634.0 346 91.9
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.7e-174 615.1 344 88.7
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 8.1e-158 561.2 355 80.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.0e-156 556.6 499 59.3
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 4.3e-151 538.9 489 52.8
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 2.0e-148 530.0 290 88.3
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 5.8e-148 528.5 287 88.2
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-141 506.9 356 74.2
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.3e-136 490.0 275 89.1
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 2.2e-134 483.4 510 49.6
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.0e-128 464.5 501 49.3
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 3.1e-125 453.0 285 80.7
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.2e-95 354.8 190 86.8
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.6e-81 307.8 409 39.4
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.6e-65 254.6 325 46.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.4e-64 251.5 362 44.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 5.1e-43 179.9 120 70.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 4.3e-42 176.8 93 89.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.6e-28 131.7 79 79.7
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.1e-26 125.6 93 63.4
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 5.5e-21 106.7 68 72.1
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.1e-18 99.0 67 71.6
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.6e-15 87.8 87 55.2
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.4e-11 75.5 125 40.0
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 1.5e-10 72.0 48 64.6
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 2.0e-07 61.6 35 77.1


User provided reference genes

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