Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.3e-194 682.9 351 100.0
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 5.3e-177 624.4 351 90.6
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 3.0e-148 528.9 351 75.8
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 1.1e-145 520.4 355 75.8
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.1e-145 520.4 353 76.2
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 4.1e-145 518.5 351 75.8
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 1.3e-143 513.5 350 75.4
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.1e-142 510.4 351 75.5
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 1.2e-141 506.9 355 75.5
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 1.0e-140 503.8 362 72.7
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 1.8e-140 503.1 362 73.5
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 8.9e-140 500.7 351 74.1
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 8.9e-140 500.7 325 78.8
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 1.2e-139 500.4 355 72.7
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 1.2e-139 500.4 363 72.7
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 2.6e-139 499.2 359 73.5
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 1.7e-138 496.5 357 73.1
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 2.2e-138 496.1 327 77.7
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 2.8e-138 495.7 360 72.8
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.9e-138 495.0 321 78.8
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.9e-138 495.0 361 73.1
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 1.8e-137 493.0 297 83.5
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 1.8e-137 493.0 297 83.5
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 1.8e-137 493.0 356 71.9
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 2.4e-137 492.7 358 73.5
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 4.1e-137 491.9 353 72.8
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 9.2e-137 490.7 350 72.3
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 2.0e-136 489.6 355 73.8
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 2.7e-136 489.2 301 80.7
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.8e-136 487.6 344 72.4
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 7.8e-136 487.6 298 81.9
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.0e-135 487.3 318 78.3
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.3e-135 486.9 344 72.1
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 2.3e-135 486.1 301 81.4
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.3e-135 486.1 353 72.8
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 2.3e-135 486.1 359 72.1
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.9e-135 485.3 351 73.2
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 5.0e-135 485.0 317 78.2
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 5.0e-135 485.0 303 81.2
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 5.0e-135 485.0 301 80.4
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 8.6e-135 484.2 301 80.7
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.1e-134 483.8 344 72.4
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.5e-134 483.4 321 77.9
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 1.9e-134 483.0 351 71.2
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 9.5e-134 480.7 351 70.9
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 6.1e-133 478.0 351 70.1
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 8.0e-133 477.6 353 72.0
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 1.8e-132 476.5 355 72.1
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 3.1e-132 475.7 353 72.0
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 4.0e-132 475.3 306 78.1
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 8.9e-132 474.2 307 78.8
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 2.0e-131 473.0 307 78.5
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 4.4e-131 471.9 355 69.9
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.3e-130 470.3 354 70.1
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 1.3e-130 470.3 353 69.7
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.7e-130 469.9 354 69.2
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.7e-130 469.9 356 69.7
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 2.9e-130 469.2 351 69.2
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 4.9e-130 468.4 351 70.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 8.3e-130 467.6 318 75.2
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-129 467.2 337 71.2
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 1.1e-129 467.2 337 71.2
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 1.4e-129 466.8 318 76.1
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.4e-129 466.8 315 76.5
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 2.4e-129 466.1 353 70.0
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 2.4e-129 466.1 337 70.9
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 9.2e-129 464.2 302 79.8
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.0e-128 463.0 308 76.9
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 2.0e-128 463.0 358 70.4
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 3.9e-127 458.8 351 68.4
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.9e-126 456.4 358 68.7
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 5.6e-126 454.9 310 75.8
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 5.6e-126 454.9 315 75.2
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 1.4e-124 450.3 344 70.1
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 2.3e-124 449.5 352 67.3
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 5.2e-124 448.4 352 67.3
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 8.9e-124 447.6 290 79.3
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.5e-123 446.8 326 71.8
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 2.0e-123 446.4 342 69.6
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 2.6e-123 446.0 326 71.8
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 5.8e-123 444.9 306 76.1
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.8e-123 444.1 351 68.4
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.9e-122 442.6 300 78.0
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 6.4e-122 441.4 307 74.6
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 6.4e-122 441.4 352 66.8
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 8.3e-122 441.0 298 76.8
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.4e-121 440.3 352 66.5
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.1e-121 438.7 352 66.8
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.1e-121 438.0 352 66.2
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 7.1e-121 438.0 355 66.8
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 3.5e-120 435.6 351 66.4
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.3e-119 433.7 361 64.3
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.3e-119 433.7 330 70.6
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 1.5e-118 430.3 319 70.8
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 3.3e-118 429.1 318 70.8
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.6e-117 426.8 328 69.2
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 4.7e-117 425.2 275 79.3
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 8.1e-117 424.5 341 66.9
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 2.3e-116 422.9 351 65.2
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 2.0e-115 419.9 359 63.0
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 1.2e-112 410.6 242 88.4
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 7.3e-110 401.4 322 67.1
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.2e-109 400.6 289 70.9
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.2e-109 400.6 316 69.0
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 2.8e-109 399.4 316 69.0
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 1.4e-108 397.1 340 63.8
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.2e-108 395.2 352 62.2
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 2.0e-107 393.3 298 69.5
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 4.4e-107 392.1 347 62.2
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 4.9e-106 388.7 305 66.6
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 4.2e-105 385.6 354 60.5
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.2e-104 384.0 305 65.9
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 2.7e-104 382.9 261 75.5
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 2.3e-103 379.8 284 71.1
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.5e-102 377.1 263 73.8
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 4.8e-101 372.1 258 72.9
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 3.1e-100 369.4 351 59.0
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 1.5e-99 367.1 259 71.0
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 1.7e-95 353.6 248 73.4
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.3e-87 327.4 252 65.1
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.8e-85 319.7 252 64.7
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 8.4e-82 308.1 177 91.5
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.1e-81 307.8 253 67.6
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 8.2e-77 291.6 249 61.4
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 5.5e-73 278.9 289 56.7
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 5.9e-67 258.8 205 66.3
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.7e-66 257.3 191 74.3
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.9e-50 203.4 157 69.4
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 5.9e-43 179.1 118 70.3
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.0e-39 168.3 103 82.5
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 4.5e-35 152.9 103 75.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 4.5e-35 152.9 103 75.7
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.3e-34 151.4 103 69.9
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 8.3e-29 132.1 225 40.9
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 2.9e-21 107.1 63 84.1
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.8e-20 104.4 221 30.8
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 3.5e-11 73.6 44 70.5


User provided reference genes

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