Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 4.1e-136 488.0 245 100.0
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.4e-91 340.1 245 71.4
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.4e-91 340.1 245 71.4
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 2.4e-91 339.3 241 73.4
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 7.7e-90 334.3 251 70.1
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.2e-89 332.8 257 68.1
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 2.9e-89 332.4 256 70.7
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 5.0e-89 331.6 256 68.8
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 8.5e-89 330.9 255 69.4
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.4e-88 330.1 258 69.0
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 5.5e-88 328.2 238 71.4
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 5.5e-88 328.2 184 85.9
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 2.7e-87 325.9 211 77.7
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 3.6e-87 325.5 257 67.7
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.6e-87 325.5 263 67.3
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.0e-86 323.9 258 69.4
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.4e-86 323.6 251 68.9
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 2.3e-86 322.8 259 69.1
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.0e-86 322.4 253 68.0
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 3.0e-86 322.4 248 68.5
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 3.9e-86 322.0 248 66.9
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 3.9e-86 322.0 254 68.9
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.9e-86 322.0 246 68.7
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 6.7e-86 321.2 248 68.1
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 8.8e-86 320.9 233 71.2
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 8.8e-86 320.9 246 68.3
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 1.1e-85 320.5 269 66.2
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 1.1e-85 320.5 251 67.3
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 1.1e-85 320.5 251 67.3
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 2.6e-85 319.3 230 74.8
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 2.6e-85 319.3 278 62.9
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 3.3e-85 318.9 250 66.8
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 3.3e-85 318.9 185 83.8
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 4.4e-85 318.5 254 66.5
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 5.7e-85 318.2 251 66.1
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 1.3e-84 317.0 253 66.0
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 1.7e-84 316.6 248 66.9
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 1.7e-84 316.6 248 66.9
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 1.7e-84 316.6 248 66.9
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.7e-84 316.6 250 67.6
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.2e-84 316.2 261 66.3
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 3.7e-84 315.5 246 67.9
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 3.7e-84 315.5 186 82.8
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.1e-83 313.9 294 60.9
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 1.4e-83 313.5 253 65.2
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.4e-83 313.5 229 68.6
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 1.4e-83 313.5 225 72.0
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 1.4e-83 313.5 248 67.7
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 2.4e-83 312.8 252 67.1
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 3.1e-83 312.4 220 73.6
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 4.1e-83 312.0 254 64.2
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 4.1e-83 312.0 263 66.2
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 4.1e-83 312.0 247 68.0
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 4.1e-83 312.0 252 66.3
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 5.3e-83 311.6 250 67.6
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.3e-83 311.6 272 63.2
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.3e-83 311.6 263 65.4
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 6.9e-83 311.2 235 68.5
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 1.2e-82 310.5 253 66.0
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 1.2e-82 310.5 252 64.7
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.2e-82 310.5 252 65.5
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 2.0e-82 309.7 251 66.9
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 2.0e-82 309.7 243 67.1
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 2.6e-82 309.3 230 67.4
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 4.5e-82 308.5 248 65.7
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 5.9e-82 308.1 229 67.7
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 5.9e-82 308.1 230 67.4
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 7.7e-82 307.8 231 70.1
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 7.7e-82 307.8 225 70.2
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.0e-81 307.4 198 76.8
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 1.3e-81 307.0 230 67.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 2.2e-81 306.2 233 69.1
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 6.5e-81 304.7 227 67.4
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 1.1e-80 303.9 235 68.1
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.4e-80 303.5 258 65.1
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 3.2e-80 302.4 225 68.4
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 4.2e-80 302.0 231 67.1
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 7.2e-80 301.2 249 66.3
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 9.4e-80 300.8 247 64.8
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 2.1e-79 299.7 235 66.8
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 3.6e-79 298.9 246 61.8
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 3.9e-78 295.4 219 68.9
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 8.8e-78 294.3 254 63.8
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 8.8e-78 294.3 233 66.5
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.1e-77 293.9 224 68.3
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.0e-77 293.1 250 62.8
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 3.3e-77 292.4 238 65.1
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 3.3e-77 292.4 204 69.1
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 4.4e-77 292.0 256 64.5
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 7.0e-75 284.6 218 65.1
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.6e-74 282.7 173 79.2
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 2.6e-74 282.7 253 60.9
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 2.6e-74 282.7 249 63.1
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 1.3e-73 280.4 187 72.2
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 6.5e-73 278.1 249 59.4
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.9e-72 276.6 238 61.3
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 7.2e-72 274.6 187 70.6
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 9.4e-72 274.2 250 57.6
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.2e-71 273.9 201 68.7
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 2.3e-70 269.6 289 53.3
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 5.3e-67 258.5 139 87.1
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 1.9e-64 250.0 188 67.0
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 8.0e-63 244.6 246 54.5
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 3.0e-62 242.7 185 68.1
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 7.7e-58 228.0 122 87.7
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 8.0e-55 218.0 207 59.9
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 4.5e-50 202.2 185 55.1
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.4e-46 190.7 194 50.5
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 1.3e-44 184.1 192 51.6
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 1.3e-44 184.1 141 66.7
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 6.4e-44 181.8 105 81.9
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 2.0e-37 160.2 122 60.7
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.1e-35 154.5 228 41.2
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 7.3e-32 141.7 102 70.6
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 4.7e-31 139.0 102 69.6
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 8.1e-31 138.3 186 44.1
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.8e-30 135.2 71 87.3
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 2.5e-24 116.7 61 85.2
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 2.1e-18 97.1 134 50.7
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 3.5e-18 96.3 62 79.0
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 7.8e-18 95.1 85 61.2
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 4.3e-16 89.4 134 41.8
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 5.6e-16 89.0 50 78.0
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 7.3e-16 88.6 104 51.0
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 2.4e-14 83.6 69 62.3
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 2.6e-13 80.1 115 44.3
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 4.9e-12 75.9 100 48.0
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 1.3e-09 67.8 118 39.8
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 2.8e-07 60.1 55 58.2
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 6.2e-07 58.9 36 69.4


User provided reference genes

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