Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 6.4e-109 397.9 277 100.0
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 2.3e-66 256.5 280 72.5
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 8.7e-66 254.6 280 75.7
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.9e-65 253.4 276 76.1
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 4.8e-64 248.8 282 71.6
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 8.2e-64 248.1 277 76.5
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.1e-63 247.7 273 77.7
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.8e-63 246.9 280 73.9
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 6.9e-63 245.0 280 75.0
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.2e-62 244.2 274 71.5
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.5e-62 243.8 276 71.0
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.0e-62 243.4 270 76.7
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 2.0e-62 243.4 265 75.1
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 3.4e-62 242.7 266 74.4
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.4e-62 242.7 265 76.6
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 4.5e-62 242.3 277 75.5
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 4.5e-62 242.3 277 74.7
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.9e-62 241.9 222 86.9
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 5.9e-62 241.9 280 74.3
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 7.6e-62 241.5 278 71.9
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.0e-61 241.1 244 77.0
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.3e-61 240.7 219 87.7
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.3e-61 240.7 279 72.0
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.3e-61 240.7 270 76.3
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.3e-61 240.7 265 75.8
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 2.9e-61 239.6 221 87.8
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 2.9e-61 239.6 220 85.9
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 3.8e-61 239.2 232 67.7
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 3.8e-61 239.2 265 72.5
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 6.5e-61 238.4 283 74.2
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 1.1e-60 237.7 226 85.4
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.4e-60 237.3 275 72.7
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 1.9e-60 236.9 283 73.5
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.5e-60 236.5 274 73.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 3.2e-60 236.1 284 73.2
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 4.2e-60 235.7 215 87.9
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 4.2e-60 235.7 215 87.9
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.2e-60 235.7 219 89.0
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.2e-60 235.7 219 89.0
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 5.5e-60 235.3 279 63.1
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.6e-59 233.8 217 74.2
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 2.1e-59 233.4 265 75.1
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.7e-59 233.0 243 79.4
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 2.7e-59 233.0 218 83.5
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 3.6e-59 232.6 281 73.3
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 4.6e-59 232.3 268 72.4
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 6.1e-59 231.9 220 81.8
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 6.1e-59 231.9 221 86.0
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 1.3e-58 230.7 226 84.5
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 3.0e-58 229.6 290 65.2
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 3.9e-58 229.2 270 73.7
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 3.9e-58 229.2 282 72.0
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 5.1e-58 228.8 276 71.4
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 5.1e-58 228.8 318 45.0
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 8.7e-58 228.0 269 75.1
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 8.7e-58 228.0 221 77.8
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.1e-57 227.6 265 75.8
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 1.5e-57 227.3 209 89.0
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.5e-57 226.5 219 85.4
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 5.7e-57 225.3 219 85.4
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 5.7e-57 225.3 269 73.6
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 7.4e-57 224.9 268 72.8
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 9.7e-57 224.6 274 73.0
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 9.7e-57 224.6 272 73.5
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 9.7e-57 224.6 221 72.4
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.3e-56 224.2 269 72.5
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.3e-56 224.2 268 73.1
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.3e-56 224.2 215 73.5
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 1.3e-56 224.2 215 84.2
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.8e-56 223.0 269 73.6
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.8e-56 222.2 255 56.9
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 6.3e-56 221.9 222 71.2
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 8.2e-56 221.5 223 83.0
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 1.8e-55 220.3 232 78.4
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 4.1e-55 219.2 196 86.7
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 5.3e-55 218.8 271 72.0
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 9.0e-55 218.0 213 85.4
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 2.6e-54 216.5 274 70.1
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.7e-53 213.8 269 71.0
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.2e-52 209.5 264 56.8
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 5.5e-52 208.8 196 87.2
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 3.6e-51 206.1 360 43.1
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.7e-48 196.1 193 74.6
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.9e-46 188.7 182 82.4
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.3e-45 187.6 217 63.6
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 6.5e-45 185.3 218 63.8
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 9.4e-44 181.4 216 61.6
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 2.7e-43 179.9 208 74.0
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 5.3e-39 165.6 218 51.8
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.6e-38 163.3 88 88.6
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 7.7e-38 161.8 85 88.2
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.9e-37 159.8 86 87.2
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.1e-36 157.9 85 87.1
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.5e-36 156.8 88 84.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-34 151.0 88 81.8
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.4e-34 151.0 88 81.8
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 4.0e-34 149.4 85 83.5
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.0e-33 147.1 240 43.3
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 1.0e-29 134.8 181 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 8.8e-26 121.7 227 58.1
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.5e-25 120.9 216 69.4
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.1e-23 114.8 117 56.4
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 2.0e-22 110.5 127 55.1
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 3.5e-22 109.8 143 58.7
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 4.5e-22 109.4 70 75.7
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 6.5e-21 105.5 123 52.8
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.0e-18 96.7 59 78.0
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.2e-16 90.5 59 71.2
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.0e-13 81.6 183 48.1
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.0e-13 81.6 45 86.7
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 5.2e-10 69.3 66 59.1
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 1.3e-08 64.7 88 47.7
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 9.2e-07 58.5 40 72.5
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.0e-06 57.4 47 61.7


User provided reference genes

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