Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 8.4e-165 583.6 285 100.0
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 2.1e-78 296.6 274 55.8
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.7e-72 276.9 298 51.0
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 4.3e-68 262.3 281 51.6
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 3.6e-67 259.2 273 52.0
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 2.4e-66 256.5 281 49.8
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.4e-63 246.5 301 45.8
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.2e-63 245.7 327 43.1
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 9.3e-63 244.6 305 47.2
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 5.1e-61 238.8 284 49.3
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.5e-60 237.3 284 46.8
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 4.3e-60 235.7 278 46.0
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 5.6e-60 235.3 300 45.7
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 2.8e-59 233.0 282 46.5
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 4.8e-59 232.3 272 48.2
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 8.1e-59 231.5 275 46.9
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 1.1e-58 231.1 287 46.3
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.8e-58 230.3 344 41.0
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.4e-58 229.9 296 43.2
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 6.9e-58 228.4 314 42.4
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 9.0e-58 228.0 239 48.1
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.6e-57 226.5 291 42.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 9.9e-57 224.6 278 45.3
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 3.8e-56 222.6 278 45.7
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 3.8e-56 222.6 278 45.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 3.8e-56 222.6 281 45.6
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.4e-55 220.7 191 55.0
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 1.4e-55 220.7 171 60.2
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 7.1e-55 218.4 287 42.5
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 9.3e-55 218.0 277 45.1
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.6e-54 217.2 273 46.2
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.6e-54 217.2 178 56.2
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.1e-54 216.9 176 56.2
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 6.0e-54 215.3 284 45.1
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.6e-51 207.2 297 41.8
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.6e-51 207.2 276 43.5
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.1e-51 206.8 271 47.6
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.8e-50 203.8 173 55.5
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 2.9e-48 196.4 277 40.4
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 8.4e-48 194.9 228 48.2
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.0e-46 188.7 298 37.9
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.0e-45 188.0 232 45.7
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 2.3e-45 186.8 305 37.7
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 9.7e-44 181.4 229 46.3
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 6.3e-43 178.7 263 40.7
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.0e-41 173.7 236 44.1
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 2.0e-41 173.7 290 40.3
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.3e-37 160.2 204 47.1
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 5.1e-37 159.1 256 37.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.1e-34 149.8 281 39.1
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 9.1e-34 148.3 230 40.0
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 9.1e-34 148.3 225 42.7
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.6e-33 146.7 286 38.8
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 1.0e-32 144.8 309 35.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 1.7e-32 144.1 125 56.0
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 2.2e-32 143.7 222 41.0
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.1e-30 137.1 182 41.2
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 3.7e-27 126.3 363 30.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 2.1e-22 110.5 176 36.4
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 3.6e-22 109.8 143 39.9
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.1e-20 104.8 123 43.9
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.6e-17 94.4 111 40.5
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.3e-16 91.3 111 40.5
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 6.5e-16 89.0 117 39.3
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.1e-15 88.2 117 39.3
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.1e-15 88.2 115 38.3
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 7.2e-15 85.5 117 38.5
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 7.2e-15 85.5 117 38.5
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 7.2e-15 85.5 117 37.6
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 2.1e-14 84.0 112 40.2
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.7e-14 82.8 107 37.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 6.1e-14 82.4 167 32.9
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 8.0e-14 82.0 160 32.5
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 1.4e-13 81.3 119 37.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 1.4e-13 81.3 126 34.1
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 3.0e-13 80.1 141 32.6
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 3.0e-13 80.1 141 32.6
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 4.0e-13 79.7 141 32.6
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 5.2e-13 79.3 114 36.0
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 6.8e-13 79.0 119 34.5
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 8.8e-13 78.6 111 36.0
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 1.2e-12 78.2 139 38.1
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.5e-12 77.8 100 38.0
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 2.6e-12 77.0 123 36.6
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 9.7e-12 75.1 216 27.8
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-11 74.7 111 38.7
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-11 74.7 69 46.4
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-11 74.7 69 46.4
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.3e-11 74.7 125 34.4
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.3e-11 74.7 146 32.9
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 3.7e-11 73.2 111 34.2
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 8.3e-11 72.0 111 37.8
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 8.3e-11 72.0 92 46.7
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.1e-10 70.1 108 33.3
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 4.1e-10 69.7 108 33.3
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 9.1e-10 68.6 108 32.4
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 3.5e-09 66.6 108 34.3
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.5e-09 66.2 60 50.0
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.9e-09 65.9 39 66.7
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 5.9e-09 65.9 39 66.7
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 1.0e-08 65.1 121 31.4
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.3e-08 64.7 95 37.9
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.9e-08 63.5 144 26.4
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 3.8e-08 63.2 65 46.2
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 5.0e-08 62.8 57 49.1
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 5.0e-08 62.8 57 49.1
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 5.0e-08 62.8 49 53.1
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 6.5e-08 62.4 58 48.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.1e-07 61.6 50 52.0
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 3.2e-07 60.1 146 31.5
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 5.5e-07 59.3 58 51.7
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 7.2e-07 58.9 93 33.3
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 1.2e-06 58.2 56 42.9
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.2e-06 58.2 58 37.9
SEGI_33947 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 2.1e-06 57.4 50 48.0


User provided reference genes

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