Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.4e-215 752.7 371 100.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.1e-200 702.2 371 93.3
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.0e-170 602.1 347 84.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-169 600.1 347 84.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.3e-169 598.2 346 85.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.6e-169 597.8 346 82.9
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.6e-169 597.8 345 84.6
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.3e-169 597.4 349 84.8
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.1e-167 593.6 347 83.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.4e-167 592.4 345 83.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 5.3e-167 591.3 347 82.7
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 9.0e-167 590.5 345 82.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.6e-166 589.0 346 82.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.6e-166 589.0 347 84.4
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 7.6e-166 587.4 347 81.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.7e-165 586.3 347 81.8
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.7e-165 586.3 347 81.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.8e-165 585.1 351 82.6
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.4e-165 583.9 345 83.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 3.2e-164 582.0 345 82.9
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 6.0e-163 577.8 343 82.5
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.9e-162 575.1 347 81.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.7e-162 574.3 352 81.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.9e-161 572.8 350 80.3
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.3e-160 570.1 347 82.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.1e-160 569.3 347 80.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 6.2e-160 567.8 346 80.3
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.2e-160 567.8 350 79.7
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 8.1e-160 567.4 349 78.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 6.9e-159 564.3 378 75.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-158 563.5 360 76.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.9e-157 558.1 354 76.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.5e-156 555.8 327 82.9
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.2e-156 555.4 350 76.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 5.5e-156 554.7 347 77.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.7e-155 552.4 348 78.2
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.6e-155 551.6 347 76.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.0e-154 550.4 347 76.4
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.9e-154 548.5 351 76.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.9e-154 548.5 355 75.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.5e-153 546.6 325 81.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.3e-153 545.4 359 75.5
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 7.4e-153 544.3 348 76.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.3e-152 543.5 324 82.7
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.8e-152 542.3 345 75.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.8e-152 541.6 351 74.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.4e-151 539.3 327 80.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.3e-151 538.1 350 75.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 6.9e-151 537.7 353 73.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.0e-150 536.2 358 74.6
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.6e-150 535.8 349 76.5
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.4e-150 535.4 352 75.0
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.2e-149 532.7 352 74.4
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 2.9e-149 532.3 350 75.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.8e-149 531.9 347 74.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.9e-148 529.6 351 74.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.2e-148 528.9 348 75.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.2e-148 528.9 349 75.1
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.3e-148 527.3 333 76.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-147 526.9 357 73.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.7e-147 525.8 351 74.1
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.3e-146 523.5 354 73.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.3e-146 523.5 349 72.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.3e-146 522.7 348 73.6
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.9e-146 521.9 352 73.3
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.3e-145 518.5 327 77.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.7e-145 518.1 347 73.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.4e-145 517.7 352 74.1
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.3e-144 516.9 306 83.0
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.6e-144 516.5 355 73.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.2e-144 516.2 351 72.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.7e-144 515.4 327 75.8
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.7e-144 515.4 378 68.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.7e-144 515.4 349 74.5
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 6.3e-144 514.6 324 76.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.0e-143 510.8 350 73.4
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.0e-141 507.3 403 65.5
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.7e-141 506.5 353 71.7
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.7e-141 506.5 325 77.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 5.0e-141 505.0 345 73.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.2e-140 502.3 350 71.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.4e-140 500.7 337 72.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.6e-139 500.0 345 71.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.6e-139 498.8 347 72.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 7.9e-139 497.7 323 73.4
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.0e-138 495.7 326 71.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 6.7e-138 494.6 335 70.7
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.7e-138 494.6 335 71.3
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-137 492.7 328 73.2
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.3e-137 492.3 324 74.1
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.3e-137 491.9 325 73.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.3e-137 491.9 326 73.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.3e-136 490.3 344 72.7
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-136 488.4 364 66.2
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.8e-136 488.4 340 70.9
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.4e-135 486.9 341 71.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.8e-135 486.5 319 73.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 4.1e-135 485.3 324 71.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 5.3e-135 485.0 319 73.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.5e-134 483.4 326 72.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.0e-134 483.0 320 72.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.0e-134 483.0 364 68.1
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.6e-134 482.6 325 70.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.4e-134 482.3 319 72.4
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.4e-134 482.3 350 67.1
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.7e-133 479.9 340 70.3
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.2e-133 479.6 329 72.9
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.8e-133 478.8 323 69.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 8.5e-133 477.6 324 69.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.9e-132 476.5 324 69.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.9e-132 476.5 319 71.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 4.2e-132 475.3 328 71.6
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 9.4e-132 474.2 324 69.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.2e-131 473.8 324 69.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.7e-131 471.9 310 73.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 6.1e-131 471.5 347 68.9
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 7.9e-131 471.1 329 69.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.1e-129 467.2 305 74.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 3.3e-129 465.7 265 86.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.4e-129 465.3 357 65.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 7.4e-129 464.5 273 83.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.2e-128 463.0 365 63.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 6.3e-128 461.5 323 67.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.1e-127 458.8 308 72.1
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.5e-124 450.3 324 69.1
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.2e-123 447.2 331 66.8
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.6e-121 439.5 348 65.2
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.2e-120 436.4 538 46.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.4e-119 433.0 284 77.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.7e-115 419.5 265 78.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.5e-108 396.4 321 62.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.3e-101 374.0 351 54.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 6.1e-99 365.2 331 55.6
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-97 360.9 232 75.4
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.5e-94 349.4 281 65.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 6.6e-93 345.1 243 69.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.3e-92 342.4 232 72.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.0e-91 338.2 206 80.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 8.3e-88 328.2 290 57.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 7.0e-87 325.1 203 77.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 4.6e-86 322.4 267 63.3
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.5e-84 316.6 229 70.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.0e-81 307.0 188 83.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 3.1e-74 283.1 163 84.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.1e-70 270.4 371 42.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 6.9e-66 255.4 184 66.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.0e-62 242.3 213 60.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.3e-61 240.4 184 67.9
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.1e-60 238.0 161 70.8
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.9e-60 237.3 165 70.9
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.8e-59 233.4 142 78.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.2e-54 218.0 269 47.2
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.1e-50 204.9 336 40.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.7e-46 190.3 193 52.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-40 170.6 112 75.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.3e-32 144.8 304 34.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.5e-31 140.6 125 56.8
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.3e-28 129.8 378 31.2
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 4.8e-27 126.3 71 88.7
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 6.3e-27 125.9 274 31.4
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-21 107.8 215 35.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.6e-20 104.0 64 75.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 6.3e-19 99.4 63 73.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.1e-18 97.1 91 54.9
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 6.9e-18 95.9 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-17 94.7 61 73.8
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 5.7e-12 76.3 77 51.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-09 68.6 49 63.3
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.6e-06 58.2 60 51.7
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 6.1e-06 56.2 35 68.6


User provided reference genes

Program Settings