Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.9e-135 484.2 240 100.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.7e-118 429.5 240 88.3
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.2e-88 328.9 240 63.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.7e-86 323.2 239 63.2
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.5e-85 320.1 234 62.0
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.6e-85 318.2 233 63.9
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.1e-84 316.2 234 61.5
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 8.0e-84 314.3 240 63.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.4e-83 313.5 242 61.6
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.4e-83 313.5 240 61.7
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.0e-83 312.0 240 61.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.2e-83 311.6 240 60.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 8.9e-83 310.8 240 62.1
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 2.6e-82 309.3 240 62.9
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.4e-82 308.5 232 62.1
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.3e-81 307.0 230 64.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.9e-81 305.8 230 60.9
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.9e-80 303.1 240 61.7
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.3e-77 292.0 241 57.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.6e-77 291.6 240 57.5
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-76 290.4 240 55.4
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.6e-76 290.0 232 58.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 3.6e-76 288.9 240 56.2
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.4e-75 287.0 246 58.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.5e-74 283.5 240 54.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.4e-74 282.0 241 55.2
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 4.4e-74 282.0 242 56.2
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 5.8e-74 281.6 240 54.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 5.8e-74 281.6 234 57.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.2e-73 279.6 230 56.1
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.9e-72 276.6 239 54.8
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.2e-72 275.8 230 57.4
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 4.1e-72 275.4 230 57.0
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.7e-71 272.7 230 56.5
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 4.6e-71 271.9 239 56.1
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 3.0e-70 269.2 240 52.5
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.5e-69 266.9 244 52.9
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.3e-69 264.6 244 52.9
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.3e-69 264.6 244 52.9
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.8e-68 262.7 240 51.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 3.6e-68 262.3 211 61.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 4.7e-68 261.9 244 51.6
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.2e-68 261.5 240 51.7
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.1e-67 260.8 232 50.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.2e-67 258.5 231 51.5
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.8e-67 258.1 240 51.2
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 6.8e-67 258.1 238 51.7
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.5e-66 256.9 225 54.7
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.0e-66 256.5 242 53.3
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 3.4e-66 255.8 237 51.5
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.8e-66 255.0 240 53.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.8e-66 255.0 240 53.8
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.6e-66 254.6 240 53.8
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 9.9e-66 254.2 240 53.8
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.7e-65 253.4 239 50.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.7e-65 253.4 239 50.6
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.7e-65 253.4 234 55.6
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.7e-65 253.4 240 50.8
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.2e-65 253.1 232 54.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.8e-65 252.3 240 53.3
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 4.9e-65 251.9 240 50.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 6.4e-65 251.5 200 58.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.9e-64 250.0 230 51.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 3.2e-64 249.2 239 50.2
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-63 247.3 233 51.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 2.1e-63 246.5 238 49.6
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 7.8e-63 244.6 239 49.8
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.0e-62 244.2 230 50.4
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.3e-62 243.8 230 49.6
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 5.1e-62 241.9 240 51.7
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 6.6e-62 241.5 239 49.4
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 4.3e-61 238.8 237 48.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.2e-60 237.3 240 50.8
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.1e-60 236.5 236 47.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.1e-60 236.5 240 50.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.2e-60 235.0 230 49.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 8.1e-60 234.6 240 47.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.4e-59 233.0 240 46.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.4e-59 233.0 207 54.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.4e-58 229.2 236 47.5
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.8e-58 228.4 246 45.9
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.9e-58 227.6 231 47.6
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.2e-57 226.5 231 49.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.9e-57 226.1 241 47.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 6.4e-57 224.9 224 48.7
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 8.4e-57 224.6 239 46.9
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.4e-56 223.0 233 45.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-56 223.0 241 46.9
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 5.4e-56 221.9 233 47.2
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 5.4e-56 221.9 232 45.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 7.1e-56 221.5 232 44.8
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 7.1e-56 221.5 232 44.8
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.2e-55 220.7 231 46.8
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.2e-55 220.7 240 45.4
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.1e-55 219.9 236 47.9
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 3.5e-55 219.2 200 52.5
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 4.6e-55 218.8 233 46.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 4.6e-55 218.8 232 44.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.6e-55 218.8 234 46.6
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.0e-55 218.4 231 45.5
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 6.0e-55 218.4 232 44.0
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 6.0e-55 218.4 232 44.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.0e-54 217.6 242 46.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.7e-54 216.9 233 47.2
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.3e-54 216.5 241 46.1
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.1e-54 215.3 226 48.7
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 6.6e-54 214.9 242 46.3
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.9e-53 213.4 154 62.3
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.3e-53 212.6 232 45.3
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.3e-53 212.6 212 52.4
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.3e-52 210.7 230 45.2
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.8e-52 209.5 197 49.7
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.1e-51 207.6 241 43.6
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.8e-51 206.8 239 47.3
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.8e-51 206.8 243 44.9
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 2.4e-51 206.5 233 45.5
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.3e-51 205.3 208 49.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.6e-50 201.4 211 47.9
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.7e-49 200.3 211 47.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 8.4e-49 198.0 240 43.8
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.4e-48 197.2 232 44.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.9e-48 196.8 236 44.9
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.2e-48 195.7 154 59.1
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.2e-47 194.1 194 48.5
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-47 193.7 238 42.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.1e-47 193.4 236 43.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.1e-47 193.4 233 41.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.7e-47 193.0 231 41.6
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.7e-47 193.0 233 45.5
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 4.6e-47 192.2 229 43.7
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.9e-46 189.1 232 43.5
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 5.1e-46 188.7 230 46.1
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 8.7e-46 188.0 226 41.6
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.9e-45 186.8 227 43.6
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.9e-45 186.8 216 43.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.5e-45 186.4 235 41.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.7e-44 182.6 236 43.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.7e-44 182.6 236 43.2
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.0e-42 176.8 178 46.6
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 7.6e-42 174.9 233 35.2
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 1.7e-41 173.7 183 46.4
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.6e-39 167.2 147 52.4
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.6e-39 167.2 155 50.3
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.1e-39 166.8 153 50.3
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.5e-39 166.0 211 43.6
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 3.5e-39 166.0 210 40.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.1e-37 161.0 214 37.4
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.5e-37 160.6 165 47.3
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.5e-37 159.8 232 40.5
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.5e-37 159.8 237 35.0
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.4e-37 158.3 219 42.0
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 3.7e-36 156.0 171 45.6
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 4.8e-36 155.6 230 37.4
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.8e-35 153.7 242 34.3
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.9e-33 146.4 145 48.3
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.4e-32 144.1 114 56.1
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.7e-31 139.8 117 56.4
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 3.9e-30 136.0 139 44.6
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.7e-30 135.2 210 38.6
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.8e-27 127.1 191 34.6
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.9e-26 122.1 201 37.3
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 5.5e-24 115.5 210 36.2
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.1e-23 113.6 152 42.1
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 4.6e-23 112.5 136 45.6
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.7e-21 104.8 92 52.2
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 6.3e-20 102.1 123 45.5
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 2.4e-19 100.1 87 54.0
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 6.9e-19 98.6 147 34.0
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.2e-18 97.8 92 46.7
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-18 97.8 200 31.5
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 3.4e-18 96.3 78 52.6
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 5.0e-17 92.4 82 54.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 101 40.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 2.1e-15 87.0 100 41.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.1e-15 87.0 80 50.0
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 2.6e-13 80.1 99 36.4
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.8e-11 73.9 116 42.2
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.1e-11 73.2 67 50.7
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.3e-09 67.8 81 35.8
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 7.2e-08 62.0 58 50.0
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.7e-06 55.5 58 50.0


User provided reference genes

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