Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 0.0e+00 1127.5 563 100.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.8e-242 840.9 572 71.9
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 4.6e-239 831.2 569 72.6
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.3e-237 825.1 573 72.3
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.4e-235 819.7 525 75.0
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.6e-234 815.5 487 80.7
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 7.6e-234 813.9 560 71.8
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 3.8e-233 811.6 566 72.3
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.9e-232 809.3 568 73.1
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.7e-231 805.4 572 72.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 7.8e-231 803.9 569 71.2
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 6.6e-230 800.8 484 78.9
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 8.7e-230 800.4 494 77.3
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.5e-229 799.7 564 71.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 3.3e-229 798.5 524 73.3
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 9.6e-229 797.0 572 70.8
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.1e-227 793.5 571 70.6
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.3e-225 786.6 570 70.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 7.1e-224 780.8 565 69.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 6.0e-223 777.7 501 76.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.8e-222 776.2 501 74.9
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.1e-222 774.6 496 74.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 8.7e-222 773.9 478 78.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.4e-219 766.5 537 70.2
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.4e-219 765.8 538 71.9
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.3e-219 764.6 578 67.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.2e-218 763.5 564 68.3
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.5e-218 763.1 563 67.9
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.4e-218 761.9 496 74.0
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 9.9e-218 760.4 496 73.4
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.8e-217 758.4 532 69.2
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 3.8e-217 758.4 563 67.9
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 3.8e-217 758.4 554 67.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.1e-215 752.7 564 67.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.0e-214 748.8 501 72.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.9e-214 748.4 540 67.6
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.9e-214 748.4 475 74.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 3.9e-214 748.4 566 67.1
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.1e-214 748.0 577 66.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 6.7e-214 747.7 588 65.1
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 4.3e-213 745.0 539 67.7
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 9.6e-213 743.8 492 72.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 2.8e-212 742.3 567 67.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 8.2e-212 740.7 541 66.5
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.4e-211 739.2 495 72.1
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.1e-211 738.8 563 67.1
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 5.3e-211 738.0 561 66.0
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 9.0e-211 737.3 539 66.8
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.5e-210 736.5 562 66.9
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 2.6e-210 735.7 577 67.1
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 4.5e-210 734.9 479 72.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.3e-209 733.4 566 64.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.2e-209 732.6 567 67.0
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.8e-209 731.9 475 72.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.8e-209 731.9 475 72.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 6.5e-209 731.1 563 65.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.9e-208 729.6 542 66.6
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.2e-208 728.8 578 65.2
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 7.1e-208 727.6 475 72.4
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 7.1e-208 727.6 473 71.9
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 7.1e-208 727.6 572 65.6
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.6e-207 726.5 520 68.1
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.1e-207 726.1 475 72.2
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.5e-207 725.3 538 69.5
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 7.9e-207 724.2 525 68.8
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-206 723.8 538 69.3
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-206 723.4 475 72.2
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.8e-206 723.0 473 72.9
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.0e-206 722.2 496 72.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.9e-206 721.8 525 65.5
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.9e-206 721.8 484 72.5
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.1e-206 721.5 508 69.5
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.9e-205 719.5 555 65.4
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 7.4e-205 717.6 469 72.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.7e-204 715.3 466 73.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.8e-204 714.9 557 65.4
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 8.2e-204 714.1 498 69.3
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.1e-203 712.2 497 72.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.1e-203 711.8 563 65.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.6e-202 709.1 516 67.4
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.0e-201 707.2 473 71.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-201 706.8 539 65.1
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.8e-201 705.3 503 68.8
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 5.0e-201 704.9 539 64.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.4e-200 703.4 609 60.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.9e-200 703.0 459 74.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.2e-200 701.0 473 72.7
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 9.4e-200 700.7 561 64.7
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.6e-199 698.7 561 63.8
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.3e-198 696.0 506 66.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.0e-198 695.7 494 69.2
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.1e-198 694.9 557 64.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.1e-198 694.9 485 70.3
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.7e-198 694.5 473 67.9
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.1e-197 693.7 520 66.0
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.0e-197 693.0 462 71.9
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.3e-197 692.2 477 69.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.8e-196 689.1 492 68.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.2e-196 687.6 555 61.8
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.1e-195 687.2 628 58.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.8e-195 686.4 636 57.4
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 9.1e-195 684.1 538 66.2
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.2e-194 683.7 527 62.4
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.5e-194 681.8 478 66.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.5e-193 677.6 525 63.4
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.2e-192 675.2 479 66.6
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 9.4e-192 674.1 462 70.1
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.2e-191 673.7 459 69.3
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.0e-185 654.1 472 68.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.4e-182 643.7 572 61.7
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.0e-181 639.8 536 61.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.3e-180 637.1 617 56.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.3e-179 631.7 511 61.4
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-175 619.8 489 60.9
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-173 614.0 366 80.3
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.2e-173 614.0 565 58.8
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 2.2e-172 609.8 363 80.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.2e-162 577.4 391 70.3
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.3e-160 569.3 494 60.7
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 7.2e-160 568.2 529 56.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.0e-150 537.7 459 57.3
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.0e-150 535.8 503 56.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.7e-148 530.4 467 56.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.2e-146 524.2 362 70.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-141 507.7 470 54.9
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.5e-141 507.3 334 73.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 5.4e-139 498.8 343 69.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.2e-138 497.7 361 69.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.2e-138 497.7 381 66.9
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.6e-128 462.2 289 75.8
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 8.1e-119 431.8 375 61.6
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.2e-108 397.1 243 77.4
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.5e-106 389.8 475 45.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.0e-105 388.3 487 45.0
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 2.3e-105 387.1 315 61.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 8.4e-100 368.6 232 75.4
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.2e-98 364.8 251 69.3
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 8.7e-97 358.6 214 77.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-96 357.8 219 78.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.9e-96 357.5 303 59.7
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.1e-94 351.7 296 62.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.0e-92 342.8 216 75.9
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.3e-87 328.2 453 41.1
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.4e-86 324.7 315 52.1
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 2.3e-81 307.4 201 68.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 9.1e-78 295.4 466 37.8
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.2e-77 295.0 272 61.8
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.5e-77 293.1 187 77.0
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.5e-76 289.3 274 51.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.6e-66 256.9 270 54.4
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.5e-61 240.0 483 33.5
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.0e-60 238.8 188 67.0
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.4e-56 223.4 180 61.1
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.3e-55 219.5 139 75.5
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.8e-49 201.4 114 80.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-48 198.4 277 44.8
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.1e-46 192.2 125 68.0
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 8.6e-44 182.6 124 67.7
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.6e-37 160.2 137 54.0
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 7.8e-37 159.5 153 53.6
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.5e-32 145.2 322 34.2
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 5.8e-32 143.3 94 66.0
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.3e-31 142.1 81 79.0
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.3e-31 139.4 80 83.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-30 138.7 167 49.1
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 7.0e-30 136.3 318 32.4
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.7e-29 134.4 77 83.1
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-27 129.0 88 69.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.5e-27 127.9 133 56.4
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.3e-25 121.3 76 76.3
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-22 112.1 64 82.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.7e-21 107.8 84 58.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 4.6e-21 107.1 89 61.8
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.7e-20 105.1 94 52.1
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 8.6e-20 102.8 90 60.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 5.6e-19 100.1 74 55.4
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-18 99.0 62 69.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.6e-18 98.6 64 68.8
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.1e-18 98.2 80 60.0
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 6.4e-15 86.7 52 75.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 7.1e-14 83.2 51 68.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.6e-10 70.9 163 34.4
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 8.1e-10 69.7 48 68.8
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.8e-09 66.6 63 49.2
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-08 65.9 111 38.7
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 4.9e-07 60.5 44 56.8
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 6.4e-07 60.1 112 38.4


User provided reference genes

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