Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.9e-161 572.8 366 100.0
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 4.3e-113 412.1 364 67.0
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 9.6e-113 411.0 367 64.0
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.3e-112 410.6 369 63.1
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.3e-112 410.6 368 63.3
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.2e-109 399.8 372 62.6
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.5e-109 398.3 368 63.3
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.9e-108 396.7 366 61.7
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.9e-108 396.7 371 62.3
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.5e-108 396.4 369 62.6
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 4.2e-108 395.6 363 62.5
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 9.3e-108 394.4 367 61.6
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.6e-107 393.7 368 62.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 3.5e-107 392.5 369 63.1
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 3.5e-107 392.5 385 59.0
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.8e-106 390.2 360 62.2
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 5.1e-106 388.7 387 58.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.5e-105 387.1 363 63.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.9e-105 386.7 385 61.3
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.5e-105 386.3 368 60.6
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 9.6e-105 384.4 371 59.6
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 9.0e-103 377.9 366 59.6
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.6e-102 376.3 364 59.1
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 7.6e-102 374.8 369 60.7
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 7.6e-102 374.8 366 60.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.0e-101 374.4 364 59.3
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.2e-101 373.2 370 61.6
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.9e-101 372.9 366 58.5
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 5.0e-101 372.1 364 60.2
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 5.0e-101 372.1 364 59.6
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 6.5e-101 371.7 363 59.8
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.1e-100 370.9 369 60.2
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.1e-100 370.9 369 60.2
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 1.4e-100 370.5 366 58.2
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.9e-100 370.2 369 59.3
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.2e-100 369.4 365 57.8
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 3.2e-100 369.4 361 59.0
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.2e-100 369.0 366 59.6
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 4.2e-100 369.0 361 60.7
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 4.2e-100 369.0 358 59.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 7.2e-100 368.2 365 59.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.1e-99 366.7 365 59.7
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.6e-99 365.5 363 58.7
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 6.1e-99 365.2 358 58.7
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.1e-99 365.2 358 59.2
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 6.1e-99 365.2 363 59.0
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.3e-98 364.0 365 63.0
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.0e-98 362.8 368 58.4
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.0e-98 362.8 366 57.1
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.9e-98 362.5 358 58.7
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 3.9e-98 362.5 367 59.4
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 5.1e-98 362.1 363 59.5
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 6.7e-98 361.7 360 60.0
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 8.7e-98 361.3 365 58.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.5e-97 360.5 370 56.8
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.9e-97 360.1 378 61.1
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.5e-97 359.8 362 57.2
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 5.7e-97 358.6 433 52.4
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 7.4e-97 358.2 361 59.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 9.7e-97 357.8 362 58.6
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.6e-96 357.1 369 56.4
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.8e-96 356.3 364 58.5
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-95 354.4 375 56.0
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.1e-95 354.4 366 57.1
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.1e-95 354.4 366 57.1
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.1e-95 354.4 366 57.1
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.5e-94 350.5 369 57.7
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.6e-94 349.7 375 55.7
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.0e-93 347.8 376 57.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.0e-93 347.8 380 55.3
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.3e-93 347.4 364 57.7
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 1.7e-93 347.1 380 55.3
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 5.5e-92 342.0 364 57.1
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.2e-91 340.9 398 52.5
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 7.9e-91 338.2 367 56.1
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.0e-90 336.3 340 59.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 6.7e-90 335.1 365 53.7
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.0e-89 333.6 368 55.7
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 3.3e-89 332.8 369 54.7
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.1e-87 327.8 360 56.9
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 3.1e-87 326.2 382 52.1
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.1e-87 325.9 367 53.1
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.5e-86 323.9 343 55.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.0e-86 323.6 378 54.5
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 3.4e-86 322.8 367 57.8
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 4.5e-86 322.4 366 53.0
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 7.7e-86 321.6 364 53.3
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 8.5e-85 318.2 386 50.0
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-84 317.8 367 57.5
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.7e-83 313.2 367 52.6
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 3.6e-83 312.8 379 53.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.6e-83 312.8 380 53.4
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.6e-83 312.8 380 53.2
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 3.6e-83 312.8 377 50.4
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 6.1e-83 312.0 431 47.6
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.4e-82 310.8 366 54.9
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.5e-81 307.4 363 51.8
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 4.4e-81 305.8 368 55.7
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.3e-80 304.3 363 51.5
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.8e-79 300.4 401 47.9
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.1e-79 299.7 341 51.3
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.2e-78 297.7 377 53.6
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.6e-78 296.6 368 47.6
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 6.5e-77 292.0 380 52.6
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.5e-76 290.8 380 52.4
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.2e-75 287.7 378 52.9
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.7e-75 286.6 366 48.9
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 8.0e-75 285.0 378 51.9
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 8.0e-75 285.0 378 51.9
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.3e-73 279.6 373 50.9
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.3e-73 279.6 369 48.8
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 2.2e-72 276.9 358 48.9
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.7e-70 270.0 365 47.1
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.2e-65 254.6 237 60.3
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 5.7e-65 252.3 234 61.1
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.4e-63 246.9 336 54.8
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.9e-60 237.3 393 39.7
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.4e-58 231.1 364 42.0
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.8e-58 228.8 303 48.8
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 8.0e-51 205.3 283 55.1
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 4.6e-46 189.5 438 32.9
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.3e-45 188.0 351 36.5
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.5e-44 181.8 183 57.4
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 8.1e-35 152.1 367 30.8
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.4e-31 140.6 163 51.5
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 3.6e-27 126.7 210 43.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.9e-23 114.4 79 69.6
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 7.1e-23 112.5 125 51.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 4.0e-18 96.7 56 87.5
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.0e-17 94.4 116 48.3
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 2.9e-16 90.5 56 78.6
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 1.4e-15 88.2 56 75.0
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.1e-11 74.3 433 26.3
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 3.6e-11 73.6 405 23.0
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 6.2e-11 72.8 50 68.0
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.3e-10 69.7 117 43.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.7e-08 64.7 249 28.1


User provided reference genes

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