Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 0.0e+00 1446.0 731 100.0
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 3.8e-262 908.3 745 64.4
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.8e-259 899.4 744 64.2
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 1.4e-256 889.8 745 62.8
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 3.5e-255 885.2 745 61.6
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 2.5e-253 879.0 749 62.6
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 7.5e-250 867.5 738 61.0
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 8.6e-246 854.0 718 63.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.3e-245 852.0 718 63.1
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.9e-243 844.0 745 59.1
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 4.3e-237 825.1 748 59.1
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 1.4e-235 820.1 665 65.3
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.8e-235 819.7 705 63.0
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 3.1e-235 818.9 737 60.2
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 3.3e-229 798.9 752 58.2
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.5e-226 790.0 739 58.2
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 4.9e-225 785.0 737 56.3
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 6.4e-225 784.6 737 57.0
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 6.0e-223 778.1 749 55.1
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 3.0e-222 775.8 812 53.7
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 6.6e-222 774.6 747 54.1
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 8.9e-219 764.2 738 53.5
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 1.5e-218 763.5 740 54.9
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 9.9e-218 760.8 740 54.9
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 9.9e-218 760.8 740 54.2
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 5.4e-216 755.0 720 55.0
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 6.0e-215 751.5 747 53.7
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 8.7e-214 747.7 721 57.8
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 5.6e-213 745.0 754 52.8
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 4.4e-210 735.3 750 54.0
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.7e-209 733.4 737 55.4
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 2.9e-209 732.6 742 53.1
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 4.9e-209 731.9 737 55.2
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 3.2e-208 729.2 729 54.0
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 4.6e-207 725.3 754 53.6
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 6.0e-207 724.9 729 53.9
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 1.0e-206 724.2 749 54.9
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 1.0e-206 724.2 727 54.1
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 1.0e-206 724.2 649 56.7
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.9e-205 719.9 723 53.7
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 3.3e-205 719.2 738 54.2
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 4.8e-204 715.3 745 52.1
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 4.0e-203 712.2 752 52.8
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.2e-202 710.7 752 52.8
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 1.5e-202 710.3 677 56.1
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 2.0e-202 709.9 749 52.2
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 4.5e-202 708.8 780 50.1
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 7.6e-202 708.0 747 54.2
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.9e-201 706.1 737 52.9
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 4.9e-201 705.3 745 52.3
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 8.4e-201 704.5 749 52.6
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 9.3e-200 701.0 786 49.5
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 4.6e-199 698.7 759 52.3
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 7.4e-197 691.4 792 50.3
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.6e-196 690.3 818 48.2
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 3.7e-196 689.1 798 49.1
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 3.7e-196 689.1 606 60.7
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 8.1e-196 688.0 755 50.7
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 9.0e-195 684.5 724 52.5
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 1.7e-193 680.2 735 49.5
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 6.7e-190 668.3 747 50.2
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 3.3e-189 666.0 740 52.2
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 7.4e-189 664.8 772 49.5
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 2.0e-186 656.8 720 51.4
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.4e-186 656.0 720 50.4
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 5.9e-186 655.2 724 50.6
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 6.1e-183 645.2 751 48.9
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.0e-182 642.9 722 48.9
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 8.2e-180 634.8 736 49.2
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.4e-179 634.0 751 46.7
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 4.1e-179 632.5 736 48.9
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.5e-178 629.0 724 49.9
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 7.7e-178 628.2 759 47.6
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 3.6e-175 619.4 735 45.9
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 1.4e-174 617.5 694 51.4
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 1.5e-173 614.0 706 48.2
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 2.1e-167 593.6 743 45.8
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 2.2e-164 583.6 738 44.9
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 1.8e-163 580.5 733 44.1
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 4.2e-160 569.3 590 51.4
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 4.8e-148 529.3 678 44.1
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 3.8e-145 519.6 511 52.6
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 5.7e-141 505.8 539 52.1
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 2.2e-140 503.8 488 55.1
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 2.4e-139 500.4 577 49.7
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.1e-139 500.0 570 49.3
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 3.0e-134 483.4 366 67.2
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 4.0e-134 483.0 442 58.6
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 8.9e-126 455.3 407 60.9
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.2e-124 450.7 588 45.9
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 8.3e-124 448.7 447 53.5
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 7.8e-122 442.2 424 54.0
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 5.0e-121 439.5 729 38.1
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.7e-106 390.6 367 58.6
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 1.5e-104 384.8 559 42.0
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.2e-102 376.3 348 55.5
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 4.9e-100 369.8 345 55.9
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.9e-99 367.9 346 56.6
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 5.4e-99 366.3 372 51.6
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.2e-98 365.2 277 67.1
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.3e-92 345.1 330 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 1.1e-91 342.0 699 33.6
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.9e-88 331.3 932 30.5
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 5.3e-86 323.2 810 29.4
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 1.3e-81 308.5 504 41.3
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 4.8e-79 300.1 695 28.9
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 2.0e-77 294.7 256 63.3
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 2.1e-74 284.6 247 62.3
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 5.1e-73 280.0 194 70.6
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 5.5e-67 260.0 291 50.5
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 1.0e-60 239.2 721 29.0
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.9e-60 237.7 285 48.8
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 3.2e-59 234.2 277 47.7
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.0e-57 229.2 158 69.0
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 8.2e-55 219.5 893 24.0
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 9.1e-54 216.1 160 65.0
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 1.2e-53 215.7 715 28.4
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.4e-51 208.8 157 65.6
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.8e-44 184.1 137 66.4
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 5.2e-33 147.1 104 62.5
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.5e-29 134.4 98 71.4
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 2.0e-24 118.6 304 33.6
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 6.3e-23 113.6 164 42.1
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 1.5e-11 75.9 178 30.3
Cfa022750 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.5e-11 75.1 626 20.6
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 4.3e-11 74.3 128 34.4
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 7.5e-08 63.5 53 60.4
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 6.4e-07 60.5 174 27.0


User provided reference genes

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