Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.2e-58 228.4 131 100.0
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 3.7e-51 204.9 131 90.1
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 1.9e-50 202.6 131 89.3
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 4.1e-50 201.4 131 88.5
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 4.1e-50 201.4 131 88.5
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 5.4e-50 201.1 131 88.5
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 5.4e-50 201.1 131 88.5
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 2.1e-49 199.1 131 87.0
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 3.5e-49 198.4 131 87.0
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 3.5e-49 198.4 131 87.8
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 6.0e-49 197.6 131 87.8
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.0e-48 196.8 131 86.3
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.7e-48 196.1 132 87.1
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 3.0e-48 195.3 132 87.9
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.0e-48 195.3 131 85.5
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 3.0e-48 195.3 131 85.5
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 3.9e-48 194.9 131 84.7
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 5.1e-48 194.5 131 86.3
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 5.1e-48 194.5 131 84.7
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 6.6e-48 194.1 132 87.1
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 8.6e-48 193.7 131 85.5
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 85.3
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.1e-47 193.4 130 84.6
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.5e-47 193.0 132 85.6
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.9e-47 192.6 130 86.9
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.9e-47 192.6 131 85.5
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.9e-47 192.6 131 85.5
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 3.3e-47 191.8 132 87.1
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 5.6e-47 191.0 133 84.2
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 7.3e-47 190.7 131 84.0
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 7.3e-47 190.7 131 83.2
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 7.3e-47 190.7 131 84.7
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 9.6e-47 190.3 129 83.7
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 9.6e-47 190.3 131 84.0
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 9.6e-47 190.3 131 84.7
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.2e-46 189.9 133 83.5
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 2.1e-46 189.1 133 82.7
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 3.6e-46 188.3 130 82.3
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 4.7e-46 188.0 131 83.2
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 6.2e-46 187.6 130 83.8
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.4e-45 186.4 152 75.0
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.4e-45 185.7 131 80.2
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 3.1e-45 185.3 129 82.2
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 4.0e-45 184.9 131 84.0
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 5.2e-45 184.5 131 83.2
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 6.8e-45 184.1 131 79.4
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 6.8e-45 184.1 131 79.4
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 8.9e-45 183.7 132 82.6
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 8.9e-45 183.7 132 82.6
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.2e-44 183.3 132 82.6
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 1.5e-44 183.0 129 81.4
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 2.0e-44 182.6 132 81.8
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 2.6e-44 182.2 129 80.6
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 3.4e-44 181.8 131 82.4
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.4e-44 181.8 119 87.4
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 4.4e-44 181.4 132 81.1
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 5.8e-44 181.0 135 81.5
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 5.8e-44 181.0 163 69.3
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 7.6e-44 180.6 131 83.2
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 7.6e-44 180.6 131 80.2
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 9.9e-44 180.3 131 78.6
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.7e-43 179.5 131 81.7
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.7e-43 179.5 131 82.4
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.7e-43 179.5 129 79.1
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 2.9e-43 178.7 128 79.7
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 4.9e-43 177.9 132 79.5
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 6.4e-43 177.6 118 87.3
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 8.4e-43 177.2 132 81.8
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-42 176.8 129 80.6
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.1e-42 176.8 129 80.6
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.4e-42 176.4 118 85.6
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.9e-42 176.0 118 87.3
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.9e-42 176.0 118 86.4
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 4.2e-42 174.9 129 77.5
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 4.2e-42 174.9 118 87.3
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 5.4e-42 174.5 131 79.4
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.1e-41 172.6 119 85.7
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 6.0e-41 171.0 118 85.6
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 6.0e-41 171.0 118 83.1
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 1.0e-40 170.2 121 80.2
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.0e-40 170.2 122 79.5
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 1.0e-40 170.2 118 85.6
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.0e-40 170.2 130 78.5
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.7e-40 169.5 122 79.5
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.7e-40 169.5 131 78.6
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 3.9e-40 168.3 121 81.8
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 6.6e-40 167.5 131 76.3
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.1e-39 166.8 120 81.7
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.9e-39 166.0 116 81.9
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.9e-39 166.0 133 75.9
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 6.2e-38 161.0 118 82.2
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.4e-37 159.8 128 74.2
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.8e-37 159.5 131 74.8
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 3.1e-37 158.7 114 80.7
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.1e-37 158.7 114 84.2
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 6.9e-37 157.5 131 73.3
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.0e-37 157.1 131 74.8
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.0e-37 157.1 131 74.8
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.2e-36 156.8 154 65.6
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-36 156.8 128 73.4
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.5e-36 156.4 132 73.5
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 5.8e-36 154.5 132 75.8
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.1e-34 150.2 132 72.0
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-34 150.2 132 72.7
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.4e-34 149.8 132 72.0
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 2.1e-33 146.0 118 77.1
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.3e-32 143.3 132 69.7
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 3.0e-32 142.1 130 67.7
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.5e-31 139.8 130 67.7
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 4.3e-31 138.3 119 73.1
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 7.4e-31 137.5 142 62.7
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 9.6e-31 137.1 112 73.2
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 3.6e-30 135.2 116 70.7
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 4.8e-30 134.8 131 65.6
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 1.1e-29 133.7 131 63.4
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 6.9e-29 131.0 94 77.7
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 4.5e-28 128.3 82 89.0
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 5.8e-28 127.9 95 76.8
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 8.4e-27 124.0 80 83.8
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.2e-25 120.2 85 83.5
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.1e-25 119.4 134 58.2
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 7.9e-25 117.5 127 59.1
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.0e-24 117.1 130 60.0
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 1.8e-24 116.3 86 77.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 5.1e-24 114.8 131 59.5
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 3.3e-23 112.1 66 92.4
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 7.4e-23 110.9 68 88.2
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.6e-22 109.8 136 56.6
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.1e-21 105.5 70 82.9
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 5.8e-20 101.3 68 82.4
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 4.9e-19 98.2 121 52.1
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 3.5e-17 92.0 62 87.1
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 3.5e-17 92.0 123 49.6
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 3.0e-16 89.0 54 90.7
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 3.0e-16 89.0 272 33.1
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.1e-15 87.0 58 81.0
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 9.6e-15 84.0 54 85.2
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 2.1e-14 82.8 87 54.0
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 2.8e-14 82.4 64 75.0
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.4e-13 79.3 63 73.0
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 3.1e-13 79.0 75 68.0
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 8.7e-08 60.8 40 82.5
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.3e-06 57.0 74 58.1


User provided reference genes

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