Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.0e-105 386.7 188 100.0
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 85.6
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 9.7e-93 343.6 188 86.7
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 1.3e-92 343.2 188 86.7
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 86.2
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.2e-92 342.4 188 86.2
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 86.2
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.8e-92 342.0 188 86.2
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 3.7e-92 341.7 188 85.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 6.3e-92 340.9 188 85.6
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 8.2e-92 340.5 188 86.7
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 83.5
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.1e-91 340.1 188 86.2
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 1.8e-91 339.3 188 84.0
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.4e-91 339.0 188 84.0
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 4.1e-91 338.2 188 83.5
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 86.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 6.9e-91 337.4 188 83.5
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 1.2e-90 336.7 188 85.1
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 83.5
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.5e-90 336.3 188 84.6
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.6e-90 335.5 188 83.0
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 83.5
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.0
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 5.9e-90 334.3 188 84.0
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 81.9
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 81.9
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 80.9
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.5
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 83.5
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 5.0e-89 331.3 188 82.4
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 80.9
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 83.5
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 82.4
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 82.4
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 83.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 4.2e-88 328.2 188 83.5
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 82.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 82.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 82.4
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 7.2e-88 327.4 186 82.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 83.0
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 83.5
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 82.4
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 9.4e-88 327.0 188 82.4
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 82.4
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.2e-87 326.6 186 82.3
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 83.5
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.9
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 81.9
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.1e-87 325.9 188 82.4
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.9
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.9
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.9
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 81.9
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.7e-87 325.5 179 85.5
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.7e-87 325.5 187 82.4
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 3.6e-87 325.1 186 81.7
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.9
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 4.7e-87 324.7 188 81.9
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 4.7e-87 324.7 186 80.6
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 4.7e-87 324.7 186 80.6
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 81.4
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 81.9
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-86 323.6 190 82.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 1.0e-86 323.6 190 82.1
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.4
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 80.9
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.3
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 82.4
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.3
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 80.9
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 81.4
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 82.4
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 3.9e-86 321.6 186 80.1
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 81.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 6.7e-86 320.9 188 80.3
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 80.9
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 81.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 2.0e-85 319.3 188 80.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 4.4e-85 318.2 188 80.9
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 81.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 80.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.2e-84 315.8 188 79.8
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 79.8
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.7e-84 315.1 188 80.9
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 79.3
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 81.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 79.8
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 1.4e-83 313.2 188 81.4
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 81.4
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 81.4
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 80.9
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 5.3e-83 311.2 188 78.2
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 9.1e-83 310.5 180 82.2
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 2.0e-82 309.3 188 77.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 77.1
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.6
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 76.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.2e-81 305.8 169 82.8
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.9e-81 305.4 188 76.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 5.0e-81 304.7 189 77.8
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 77.7
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.9e-80 302.8 174 82.8
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 78.7
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 5.5e-80 301.2 188 79.3
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 7.2e-80 300.8 188 76.6
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 3.6e-79 298.5 189 77.2
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 6.1e-79 297.7 189 77.8
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 1.0e-78 297.0 188 75.0
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 1.8e-78 296.2 180 76.7
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.8e-78 296.2 189 77.8
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 5.2e-78 294.7 188 73.4
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 75.3
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.5e-77 293.1 189 77.2
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 2.0e-77 292.7 188 75.0
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 4.4e-77 291.6 190 74.2
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 1.7e-76 289.7 188 73.4
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 2.8e-76 288.9 189 76.7
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 4.8e-76 288.1 188 73.9
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 4.2e-72 275.0 188 69.7
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 4.7e-71 271.6 179 73.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.0e-70 270.4 179 72.6
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.3e-70 269.2 188 65.4
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.2e-69 266.9 188 71.8
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.5e-69 266.5 188 67.6
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 2.6e-69 265.8 188 72.3
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 3.4e-69 265.4 189 66.7
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 5.7e-69 264.6 187 66.8
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 7.5e-69 264.2 188 67.6
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 7.5e-69 264.2 188 67.6
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 6.3e-68 261.2 188 70.7
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.4e-67 260.0 187 66.3
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 2.7e-66 255.8 181 69.6
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-65 253.8 177 70.6
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 8.6e-65 250.8 187 62.6
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 9.8e-61 237.3 188 58.5
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.2e-58 230.3 177 62.1
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 8.6e-57 224.2 165 69.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.7e-53 211.5 188 59.0
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 3.3e-48 195.7 121 76.0
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-46 190.7 173 60.7
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 7.5e-45 184.5 187 47.1
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.3e-44 183.7 188 54.3
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-43 180.6 109 78.0
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 3.5e-42 175.6 115 71.3
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 7.5e-37 157.9 123 66.7
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.4e-35 153.7 127 59.8
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-33 147.1 85 82.4
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.1e-30 137.5 79 78.5
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 5.6e-24 115.2 64 79.7
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.0e-21 106.7 92 59.8
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.8e-09 67.0 35 85.7
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 2.8e-07 59.7 39 71.8


User provided reference genes

Program Settings