Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.9e-106 388.7 206 100.0
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 5.3e-100 367.9 207 95.7
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.1e-70 270.4 212 73.6
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 7.4e-70 267.7 212 73.1
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 1.3e-69 266.9 212 72.6
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 1.3e-69 266.9 206 72.8
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 2.8e-69 265.8 207 75.8
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 6.3e-69 264.6 213 72.3
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 6.3e-69 264.6 208 75.0
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.0e-66 257.3 212 69.8
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 3.8e-66 255.4 214 69.6
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 5.0e-66 255.0 216 69.0
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 1.9e-65 253.1 207 70.0
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.5e-65 252.7 206 72.8
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 2.5e-65 252.7 213 68.1
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 4.2e-65 251.9 213 67.6
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 5.5e-65 251.5 212 68.4
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 7.2e-65 251.1 206 72.3
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 7.2e-65 251.1 206 72.3
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 9.4e-65 250.8 207 70.0
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 2.7e-64 249.2 206 67.5
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 2.7e-64 249.2 217 69.6
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 2.7e-64 249.2 206 69.4
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 4.6e-64 248.4 199 71.4
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 6.1e-64 248.1 212 67.9
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 6.1e-64 248.1 211 67.8
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 7.9e-64 247.7 212 67.5
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 1.4e-63 246.9 206 71.4
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.8e-63 246.5 206 71.4
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 2.3e-63 246.1 207 71.5
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 3.9e-63 245.4 213 70.0
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 3.9e-63 245.4 213 68.1
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.7e-63 244.6 206 70.9
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 6.7e-63 244.6 212 68.4
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 8.8e-63 244.2 213 67.6
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.5e-62 243.4 207 69.6
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 1.5e-62 243.4 212 68.4
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 2.0e-62 243.0 212 67.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 2.0e-62 243.0 212 67.9
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.6e-62 242.7 207 70.0
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 4.4e-62 241.9 210 66.7
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 4.4e-62 241.9 207 70.0
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 5.7e-62 241.5 207 69.6
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 7.4e-62 241.1 207 68.6
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.3e-61 240.4 206 69.9
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.8e-61 239.2 206 71.4
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 2.8e-61 239.2 206 71.4
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 3.7e-61 238.8 204 69.6
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 3.7e-61 238.8 207 68.1
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 3.7e-61 238.8 206 69.4
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.7e-61 238.8 206 70.9
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 6.3e-61 238.0 207 68.1
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 8.2e-61 237.7 206 66.5
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 8.2e-61 237.7 208 67.3
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 8.2e-61 237.7 208 69.7
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 8.2e-61 237.7 212 64.6
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.4e-60 236.9 208 70.2
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 1.4e-60 236.9 205 66.3
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 1.8e-60 236.5 207 66.7
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.8e-60 236.5 208 67.8
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.1e-60 235.7 207 68.1
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 3.1e-60 235.7 207 69.1
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 4.1e-60 235.3 206 67.5
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 5.3e-60 235.0 210 66.7
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 6.9e-60 234.6 210 66.7
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 9.1e-60 234.2 207 67.6
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 1.2e-59 233.8 207 70.0
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 1.2e-59 233.8 207 66.2
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.5e-59 233.4 206 68.9
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 1.5e-59 233.4 206 64.1
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 2.0e-59 233.0 208 66.8
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 2.0e-59 233.0 206 64.1
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 2.6e-59 232.6 207 66.7
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 2.6e-59 232.6 206 66.0
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 3.4e-59 232.3 208 67.3
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-59 232.3 208 66.3
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-59 232.3 208 66.8
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 3.4e-59 232.3 208 67.3
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 3.4e-59 232.3 208 66.3
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 3.4e-59 232.3 210 64.8
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 4.5e-59 231.9 211 67.8
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 4.5e-59 231.9 207 66.2
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 4.5e-59 231.9 207 68.6
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 5.9e-59 231.5 209 67.0
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.0e-58 230.7 208 67.3
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-58 230.7 208 67.3
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.0e-58 230.7 210 64.3
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 1.0e-58 230.7 207 66.7
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.3e-58 230.3 208 66.8
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.3e-58 230.3 208 66.8
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 2.2e-58 229.6 206 67.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.9e-58 229.2 206 68.4
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.9e-58 229.2 206 68.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.9e-58 229.2 206 68.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.9e-58 229.2 206 68.0
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 3.8e-58 228.8 207 68.1
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 6.5e-58 228.0 206 65.5
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.4e-57 226.9 209 66.0
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 1.9e-57 226.5 208 64.9
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 1.9e-57 226.5 206 65.0
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 5.5e-57 224.9 203 63.5
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 9.4e-57 224.2 206 65.0
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.2e-56 223.8 207 64.7
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 1.6e-56 223.4 206 63.1
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 2.1e-56 223.0 207 69.1
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 2.7e-56 222.6 207 65.7
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 4.7e-56 221.9 155 74.8
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 4.7e-56 221.9 195 65.1
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.0e-55 220.7 207 63.3
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.0e-55 220.7 206 65.0
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 3.0e-55 219.2 208 63.0
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 5.2e-55 218.4 206 65.5
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 5.2e-55 218.4 208 62.0
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 6.7e-55 218.0 206 63.6
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 6.7e-55 218.0 163 71.2
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 8.8e-55 217.6 202 62.4
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 3.3e-54 215.7 124 87.1
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 2.8e-53 212.6 208 63.0
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 2.8e-53 212.6 104 99.0
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 4.8e-53 211.8 111 92.8
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 4.8e-53 211.8 206 63.6
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 4.8e-53 211.8 206 63.6
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 8.2e-53 211.1 179 66.5
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.4e-52 210.3 104 98.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 2.4e-52 209.5 104 98.1
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 9.1e-52 207.6 104 95.2
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 4.5e-51 205.3 186 62.4
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 4.5e-51 205.3 152 71.1
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-50 204.1 104 94.2
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.3e-50 203.8 206 58.7
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 1.1e-49 200.7 185 60.0
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 2.5e-49 199.5 110 90.0
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 3.2e-49 199.1 207 60.4
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 3.6e-48 195.7 187 58.8
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 1.5e-46 190.3 100 90.0
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 3.3e-46 189.1 103 91.3
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 3.5e-43 179.1 109 77.1
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 3.5e-43 179.1 111 78.4
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.0e-42 177.6 124 71.8
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.9e-42 176.0 124 71.0
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 6.5e-42 174.9 210 56.2
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.4e-38 162.5 209 50.2
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 6.3e-37 158.3 101 74.3
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 3.8e-34 149.1 161 56.5
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 9.5e-33 144.4 102 65.7
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.6e-32 143.7 206 45.1
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 2.3e-31 139.8 121 57.0
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 6.1e-24 115.2 115 48.7
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 7.5e-22 108.2 119 46.2
FAN12G4109 Fragaria x ananassa HOM05D001946 ORTHO05D002111 7.5e-06 55.1 113 31.0


User provided reference genes

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