Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 3.1e-159 565.1 289 100.0
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 7.0e-143 510.8 286 90.2
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 8.7e-101 370.9 285 67.4
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 7.4e-100 367.9 286 64.7
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 9.6e-100 367.5 263 68.8
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 8.2e-99 364.4 283 66.4
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 8.2e-99 364.4 282 65.6
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 5.3e-98 361.7 254 69.3
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 5.3e-98 361.7 240 71.2
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 9.0e-98 360.9 285 63.9
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 4.5e-97 358.6 288 63.5
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 5.8e-97 358.2 264 67.8
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.7e-96 356.7 285 62.1
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 4.9e-96 355.1 286 64.0
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 1.9e-95 353.2 267 65.9
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.5e-95 352.8 269 63.9
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 7.1e-95 351.3 269 63.9
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.6e-94 350.1 282 63.8
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 1.6e-94 350.1 289 62.3
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.6e-94 350.1 285 62.1
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 1.6e-94 350.1 282 64.2
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.7e-94 349.4 280 63.6
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.7e-94 349.4 259 67.2
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 3.5e-94 349.0 281 63.0
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 4.6e-94 348.6 228 70.2
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.6e-94 348.6 286 63.6
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 6.0e-94 348.2 282 63.8
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 7.9e-94 347.8 280 63.2
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 5.7e-92 341.7 272 62.9
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.7e-92 341.7 272 62.9
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.4e-92 341.3 272 62.9
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.7e-92 340.9 272 62.5
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.6e-91 340.1 279 61.6
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-90 337.0 264 64.0
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.4e-90 336.3 272 62.1
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 4.1e-90 335.5 251 66.1
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.5e-89 333.6 286 62.2
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.3e-88 330.5 269 62.5
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 2.2e-88 329.7 241 65.6
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 3.8e-88 328.9 241 66.8
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 6.5e-88 328.2 295 58.0
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.1e-87 327.4 282 58.2
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 2.5e-87 326.2 239 64.9
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 7.2e-87 324.7 280 58.6
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 2.7e-86 322.8 282 60.6
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.4e-85 320.5 290 59.0
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.4e-85 320.5 334 53.6
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.8e-85 320.1 268 56.7
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 3.0e-85 319.3 274 60.6
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 3.0e-85 319.3 265 61.5
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.9e-85 318.9 239 66.1
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 3.9e-85 318.9 290 57.2
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 5.1e-85 318.5 284 59.9
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 8.8e-85 317.8 274 58.4
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 2.5e-84 316.2 282 58.2
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 7.4e-84 314.7 275 57.5
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 9.7e-84 314.3 278 59.4
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 1.7e-83 313.5 283 58.0
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.8e-83 312.8 242 64.9
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 2.8e-83 312.8 274 54.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 2.8e-83 312.8 274 54.7
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 3.7e-83 312.4 243 64.2
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 3.7e-83 312.4 283 58.0
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 3.7e-83 312.4 266 56.4
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 6.3e-83 311.6 282 55.3
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.8e-82 310.1 282 55.3
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 2.4e-82 309.7 286 55.9
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 4.1e-82 308.9 270 57.8
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 4.1e-82 308.9 281 57.3
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.1e-82 308.9 282 55.7
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 5.3e-82 308.5 282 57.8
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 5.3e-82 308.5 280 55.4
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 6.9e-82 308.1 280 55.4
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 6.9e-82 308.1 280 55.4
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 6.9e-82 308.1 280 55.4
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 6.9e-82 308.1 236 62.7
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 1.2e-81 307.4 263 59.7
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 2.0e-81 306.6 287 55.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.6e-81 306.2 277 56.3
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.6e-81 306.2 277 56.3
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 2.2e-80 303.1 280 53.9
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 2.9e-80 302.8 280 53.9
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 3.8e-80 302.4 282 54.3
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.1e-79 300.8 258 58.5
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 1.9e-79 300.1 257 58.0
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 3.2e-79 299.3 254 60.2
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 9.4e-79 297.7 254 60.6
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 7.9e-78 294.7 220 66.4
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 6.7e-77 291.6 241 61.0
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.5e-76 290.4 294 54.8
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 6.3e-75 285.0 234 63.7
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 9.1e-74 281.2 239 57.7
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 2.5e-71 273.1 228 62.3
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.2e-70 270.8 277 50.5
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.8e-69 266.9 319 47.0
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 3.9e-69 265.8 231 57.1
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 8.8e-69 264.6 216 60.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 3.3e-68 262.7 234 53.8
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 3.7e-67 259.2 238 54.2
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 1.4e-61 240.7 377 38.7
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.4e-61 240.7 282 48.2
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 8.8e-61 238.0 262 51.5
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 7.7e-57 224.9 292 44.9
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.1e-47 194.5 204 50.0
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.1e-47 194.5 239 46.0
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 5.5e-47 192.2 245 44.9
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.8e-38 163.3 236 40.7
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.2e-36 157.9 99 71.7
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.2e-36 157.9 99 71.7
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 2.2e-35 153.7 107 69.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 4.6e-33 146.0 237 34.6
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.8e-33 145.2 166 46.4
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.0e-32 143.3 166 45.8
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.1e-30 137.1 104 68.3
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.4e-29 134.4 238 34.5
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 5.8e-28 129.0 91 73.6
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 9.8e-28 128.3 146 50.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 6.0e-25 119.0 230 34.8
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.3e-21 107.1 130 46.2
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 4.9e-19 99.4 216 31.9
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.2e-18 96.7 231 33.3
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-17 94.0 104 47.1
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 4.6e-17 92.8 76 60.5
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 3.3e-15 86.7 142 35.9
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 4.3e-15 86.3 137 38.0
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.6e-14 84.3 89 50.6
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 6.8e-13 79.0 67 53.7
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 2.6e-12 77.0 51 72.5
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 1.9e-10 70.9 44 75.0
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 7.8e-09 65.5 57 54.4


User provided reference genes

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