Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0970 Tripterygium wilfordii HOM05D003034 ORTHO05D413592 6.3e-113 411.0 241 100.0
TWI36G0340 Tripterygium wilfordii HOM05D003034 ORTHO05D413625 5.1e-78 295.0 212 88.7
TWI63G1404 Tripterygium wilfordii HOM05D003034 ORTHO05D003815 1.0e-38 164.5 233 56.7
CiPaw.03G226500 Carya illinoinensis HOM05D003034 ORTHO05D003815 6.7e-30 135.2 234 50.0
CSS0003359 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 1.3e-28 131.0 233 52.4
CSS0030998 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 1.3e-28 131.0 233 52.4
Cfa003200 Carpinus fangiana HOM05D003034 ORTHO05D003815 1.7e-28 130.6 234 48.3
Haze_25807 Corylus avellana HOM05D003034 ORTHO05D003815 2.8e-28 129.8 234 52.1
CiPaw.05G159100 Carya illinoinensis HOM05D003034 ORTHO05D003815 3.7e-28 129.4 234 47.9
Duzib187G0042 Durio zibethinus HOM05D003034 ORTHO05D003815 1.8e-27 127.1 223 49.8
Hma1.2p1_0155F.1_g068240 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 2.4e-27 126.7 233 50.2
Prupe.6G190500 Prunus persica HOM05D003034 ORTHO05D003815 4.1e-27 125.9 271 46.5
Potri.006G163700 Populus trichocarpa HOM05D003034 ORTHO05D003815 5.3e-27 125.6 226 52.2
Dinv41659 Davidia involucrata HOM05D003034 ORTHO05D003815 3.4e-26 122.9 229 48.9
Dinv36700 Davidia involucrata HOM05D003034 ORTHO05D003815 5.0e-25 119.0 233 48.1
MBI01_g18395_MAGBIO Magnolia biondii HOM05D003034 ORTHO05D003815 5.0e-25 119.0 270 40.4
Nn6g34053 Nelumbo nucifera HOM05D003034 ORTHO05D003815 5.0e-25 119.0 232 44.4
ClCG11G002250 Citrullus lanatus HOM05D003034 ORTHO05D003815 6.5e-25 118.6 235 48.5
Manes.03G025400 Manihot esculenta HOM05D003034 ORTHO05D003815 3.2e-24 116.3 226 50.0
PSO675G1466 Papaver somniferum HOM05D003034 ORTHO05D003815 9.4e-24 114.8 236 41.9
QL12p007741 Quercus lobata HOM05D003034 ORTHO05D003815 9.4e-24 114.8 212 47.6
DCAR_028668 Daucus carota HOM05D003034 ORTHO05D003815 1.6e-23 114.0 234 50.0
arahy.Tifrunner.gnm1.ann1.FQ27XI Arachis hypogaea HOM05D003034 ORTHO05D003815 6.1e-23 112.1 237 46.0
Peaxi162Scf00463g00215 Petunia axillaris HOM05D003034 ORTHO05D003815 6.1e-23 112.1 232 50.4
Sc18g0001400 Simmondsia chinensis HOM05D003034 ORTHO05D003815 6.1e-23 112.1 232 44.4
arahy.Tifrunner.gnm1.ann1.SJ5F17 Arachis hypogaea HOM05D003034 ORTHO05D003815 7.9e-23 111.7 237 44.7
FAN28G1237 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.0e-22 111.3 254 42.1
Lj3g0024359 Lotus japonicus HOM05D003034 ORTHO05D003815 1.0e-22 111.3 232 44.4
Actinidia03787 Actinidia chinensis HOM05D003034 ORTHO05D003815 2.3e-22 110.2 209 48.3
Lj3g0026495 Lotus japonicus HOM05D003034 ORTHO05D003815 3.0e-22 109.8 235 45.1
Nitab4.5_0001886g0070 Nicotiana tabacum HOM05D003034 ORTHO05D003815 3.0e-22 109.8 232 50.4
Migut.F00702 Erythranthe guttata HOM05D003034 ORTHO05D003815 5.2e-22 109.0 237 50.2
RcHm_v2.0_Chr2g0091611 Rosa chinensis HOM05D003034 ORTHO05D003815 5.2e-22 109.0 218 45.0
FvH4_1g05870 Fragaria vesca HOM05D003034 ORTHO05D003815 6.7e-22 108.6 254 41.3
FAN19G3151 Fragaria x ananassa HOM05D003034 ORTHO05D003815 6.7e-22 108.6 254 41.3
FAN23G2752 Fragaria x ananassa HOM05D003034 ORTHO05D003815 6.7e-22 108.6 254 41.3
FAN26G3466 Fragaria x ananassa HOM05D003034 ORTHO05D003815 6.7e-22 108.6 254 41.3
PSO541G1919 Papaver somniferum HOM05D003034 ORTHO05D003815 6.7e-22 108.6 236 41.1
FAN26G1867 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.5e-21 107.5 254 41.3
TAR626G0953 Trochodendron aralioides HOM05D003034 ORTHO05D003815 1.5e-21 107.5 271 40.2
MD02G1060800 Malus domestica HOM05D003034 ORTHO05D003815 2.0e-21 107.1 235 48.5
Sed0020635 Sechium edule HOM05D003034 ORTHO05D003815 2.0e-21 107.1 234 44.9
GSVIVG01015321001 Vitis vinifera HOM05D003034 ORTHO05D003815 2.0e-21 107.1 251 38.2
Sabra18G0074400 Salix brachista HOM05D003034 ORTHO05D003815 4.4e-21 105.9 226 48.7
Thecc.09G102800 Theobroma cacao HOM05D003034 ORTHO05D003815 4.4e-21 105.9 271 39.5
Nitab4.5_0001364g0040 Nicotiana tabacum HOM05D003034 ORTHO05D003815 7.4e-21 105.1 221 51.1
PGSC0003DMG400000364 Solanum tuberosum HOM05D003034 ORTHO05D003815 7.4e-21 105.1 273 45.8
SGA_v2.0_scaffold2G00918 Striga asiatica HOM05D003034 ORTHO05D003815 7.4e-21 105.1 221 50.2
MD15G1194300 Malus domestica HOM05D003034 ORTHO05D003815 9.7e-21 104.8 235 46.0
QL07p045689 Quercus lobata HOM05D003034 ORTHO05D003815 9.7e-21 104.8 234 47.0
Solyc12g008370.3 Solanum lycopersicum HOM05D003034 ORTHO05D003815 9.7e-21 104.8 224 51.8
Sopen12g003330 Solanum pennellii HOM05D003034 ORTHO05D003815 9.7e-21 104.8 224 51.8
Nitab4.5_0001004g0210 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.3e-20 104.4 232 49.6
MSTRG.27345 Avicennia marina HOM05D003034 ORTHO05D003815 1.7e-20 104.0 221 45.2
CsaV3_2G008750 Cucumis sativus L. HOM05D003034 ORTHO05D003815 2.2e-20 103.6 234 42.7
ClCG11G011740 Citrullus lanatus HOM05D003034 ORTHO05D003815 2.8e-20 103.2 271 39.1
Manes.16G110600 Manihot esculenta HOM05D003034 ORTHO05D003815 2.8e-20 103.2 226 48.2
arahy.Tifrunner.gnm1.ann1.H9HV5G Arachis hypogaea HOM05D003034 ORTHO05D003815 3.7e-20 102.8 234 43.6
CsaV3_2G002010 Cucumis sativus L. HOM05D003034 ORTHO05D003815 3.7e-20 102.8 236 44.9
Oeu013765.3 Olea europaea HOM05D003034 ORTHO05D003815 3.7e-20 102.8 233 50.2
Nitab4.5_0000571g0140 Nicotiana tabacum HOM05D003034 ORTHO05D003815 4.8e-20 102.4 221 50.2
Prupe.7G222200 Prunus persica HOM05D003034 ORTHO05D003815 4.8e-20 102.4 235 42.1
Eucgr.C03783 Eucalyptus grandis HOM05D003034 ORTHO05D003815 8.2e-20 101.7 226 43.8
TAR383G0759 Trochodendron aralioides HOM05D003034 ORTHO05D003815 8.2e-20 101.7 270 38.1
MELO3C003973.2 Cucumis melo HOM05D003034 ORTHO05D003815 1.1e-19 101.3 234 42.7
Potri.018G086100 Populus trichocarpa HOM05D003034 ORTHO05D003815 2.4e-19 100.1 226 46.5
CAN.G1349.3 Capsicum annuum HOM05D003034 ORTHO05D003815 3.1e-19 99.8 272 44.5
Gohir.A06G066400 Gossypium hirsutum HOM05D003034 ORTHO05D003815 3.1e-19 99.8 271 41.3
Gohir.D06G064900 Gossypium hirsutum HOM05D003034 ORTHO05D003815 3.1e-19 99.8 271 41.7
Gorai.010G076000 Gossypium raimondii HOM05D003034 ORTHO05D003815 3.1e-19 99.8 271 41.7
Ciclev10011323m.g Citrus clementina HOM05D003034 ORTHO05D003815 4.1e-19 99.4 236 44.9
Ah.13g075360 Amaranthus hybridus HOM05D003034 ORTHO05D003815 5.3e-19 99.0 232 47.8
COL.COLO4_34776 Corchorus olitorius HOM05D003034 ORTHO05D003815 7.0e-19 98.6 271 42.1
DCAR_019351 Daucus carota HOM05D003034 ORTHO05D003815 7.0e-19 98.6 289 36.0
Medtr2g030450 Medicago truncatula HOM05D003034 ORTHO05D003815 9.1e-19 98.2 242 43.4
THA.LOC104814568 Tarenaya hassleriana HOM05D003034 ORTHO05D003815 9.1e-19 98.2 247 44.5
Cpa.g.sc80.4 Carica papaya HOM05D003034 ORTHO05D003815 1.2e-18 97.8 271 41.0
Lalb_Chr14g0371801 Lupinus albus HOM05D003034 ORTHO05D003815 4.5e-18 95.9 231 42.9
EL10Ac8g18404 Beta vulgaris HOM05D003034 ORTHO05D003815 7.7e-18 95.1 224 47.8
MELO3C004580.2 Cucumis melo HOM05D003034 ORTHO05D003815 7.7e-18 95.1 236 42.4
SalBow6G1785 Salvia bowleyana HOM05D003034 ORTHO05D003815 7.7e-18 95.1 243 43.6
TPR.G26332 Trifolium pratense HOM05D003034 ORTHO05D003815 7.7e-18 95.1 239 41.0
arahy.Tifrunner.gnm1.ann1.Q11F98 Arachis hypogaea HOM05D003034 ORTHO05D003815 1.3e-17 94.4 234 42.3
Lj7P662T23 Lonicera japonica HOM05D003034 ORTHO05D003815 1.7e-17 94.0 222 45.9
AUR62021432 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.9e-17 93.2 221 41.2
PGR102G1252 Punica granatum HOM05D003034 ORTHO05D003815 2.9e-17 93.2 279 39.8
Psat6g027040 Pisum sativum HOM05D003034 ORTHO05D003815 3.8e-17 92.8 164 51.2
ATR0767G058 Amborella trichopoda HOM05D003034 ORTHO05D003815 5.0e-17 92.4 243 41.2
Peaxi162Scf00665g00023 Petunia axillaris HOM05D003034 ORTHO05D003815 5.0e-17 92.4 232 47.8
AUR62010919 Chenopodium quinoa HOM05D003034 ORTHO05D003815 8.5e-17 91.7 221 46.6
Atru.chr7.1439 Acer truncatum HOM05D003034 ORTHO05D003815 1.5e-16 90.9 226 45.6
Aa31LG4G7190 Aethionema arabicum HOM05D003034 ORTHO05D003815 1.9e-16 90.5 229 41.9
Oeu011147.2 Olea europaea HOM05D003034 ORTHO05D003815 1.9e-16 90.5 259 42.5
Duzib150G0860 Durio zibethinus HOM05D003034 ORTHO05D003815 2.5e-16 90.1 222 41.4
Lalb_Chr14g0364221 Lupinus albus HOM05D003034 ORTHO05D003815 2.5e-16 90.1 231 41.6
HPP92_020241 Vanilla planifolia HOM05D003034 ORTHO05D003815 2.1e-15 87.0 226 41.2
SHI17238 Sapria himalayana HOM05D003034 ORTHO05D003815 3.6e-15 86.3 221 41.6
unitig_748.g6993 Utricularia gibba HOM05D003034 ORTHO05D003815 6.1e-15 85.5 225 45.3
QL05p029156 Quercus lobata HOM05D003034 ORTHO05D003815 8.0e-15 85.1 167 46.1
Aqoxy5G03604 Aquilegia oxysepala HOM05D003034 ORTHO05D003815 3.0e-14 83.2 238 38.7
Ca_11222_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 3.0e-14 83.2 235 40.0
Lsat_1_v5_gn_8_96740 Lactuca sativa HOM05D003034 ORTHO05D003815 5.2e-14 82.4 233 41.2
CANSAT56G3645 Cannabis sativa HOM05D003034 ORTHO05D003815 1.5e-13 80.9 232 39.2
Thecc.04G177800 Theobroma cacao HOM05D003034 ORTHO05D003815 2.0e-13 80.5 269 35.3
Actinidia32658 Actinidia chinensis HOM05D003034 ORTHO05D003815 3.3e-13 79.7 222 37.8
Thhalv10018295m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 7.5e-13 78.6 232 42.7
MD02G1060700 Malus domestica HOM05D003034 ORTHO05D003815 7.5e-13 78.6 255 35.7
PSO333G0016 Papaver somniferum HOM05D003034 ORTHO05D003815 7.5e-13 78.6 237 38.8
Lsat_1_v5_gn_8_96801 Lactuca sativa HOM05D003034 ORTHO05D003815 1.3e-12 77.8 233 39.5
Zm00001eb193840 Zea mays HOM05D003034 ORTHO05D003815 2.8e-12 76.6 229 39.3
C06p51340 Brassica napus HOM05D003034 ORTHO05D003815 3.7e-12 76.3 232 42.2
BolC6t40155H Brassica oleracea HOM05D003034 ORTHO05D003815 3.7e-12 76.3 232 42.2
A07p42740 Brassica napus HOM05D003034 ORTHO05D003815 4.8e-12 75.9 232 40.1
BraA07t31796Z Brassica rapa HOM05D003034 ORTHO05D003815 4.8e-12 75.9 232 40.1
AL2G37350 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 8.2e-12 75.1 231 39.0
RcHm_v2.0_Chr2g0091531 Rosa chinensis HOM05D003034 ORTHO05D003815 1.4e-11 74.3 220 39.5
Pp3c12_6510 Physcomitrium patens HOM05D003034 ORTHO05D003815 3.1e-11 73.2 237 35.9
PSO339G3427 Papaver somniferum HOM05D003034 ORTHO05D003815 4.1e-11 72.8 237 38.0
Ca_00851_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 7.0e-11 72.0 238 38.2
BcaC08g47218 Brassica carinata HOM05D003034 ORTHO05D003815 9.1e-11 71.6 232 40.9
ECA234G3488 Erigeron canadensis HOM05D003034 ORTHO05D003815 9.1e-11 71.6 241 40.7
AT1G77180 Arabidopsis thaliana HOM05D003034 ORTHO05D003815 1.2e-10 71.2 260 34.6
CDE02G1105 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 1.6e-10 70.9 233 35.2
ECA247G1716 Erigeron canadensis HOM05D003034 ORTHO05D003815 2.0e-10 70.5 251 39.4
BcaNung04773 Brassica carinata HOM05D003034 ORTHO05D003815 3.5e-10 69.7 231 38.1
SEGI_22940 Sequoiadendron giganteum HOM05D003034 ORTHO05D003815 5.9e-10 68.9 238 39.9
Carub.0002s2406 Capsella rubella HOM05D003034 ORTHO05D003815 1.7e-09 67.4 229 41.0
Sp5g32360 Schrenkiella parvula HOM05D003034 ORTHO05D003815 1.7e-09 67.4 232 38.4
CARHR070650 Cardamine hirsuta HOM05D003034 ORTHO05D003815 5.0e-09 65.9 231 40.3
CANSAT56G0252 Cannabis sativa HOM05D003034 ORTHO05D003815 8.5e-09 65.1 248 36.3
AUR62029022 Chenopodium quinoa HOM05D003034 ORTHO05D003815 8.5e-09 65.1 221 41.2
CDE04G2309 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 1.9e-08 63.9 233 33.9
Mapoly0133s0002 Marchantia polymorpha HOM05D003034 ORTHO05D003815 1.9e-08 63.9 281 33.8
PSO333G0001 Papaver somniferum HOM05D003034 ORTHO05D003815 4.2e-08 62.8 238 33.6
Nn2g11616 Nelumbo nucifera HOM05D003034 ORTHO05D003815 5.5e-08 62.4 81 50.6
Hma1.2p1_2925F.1_g330440 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.2e-07 61.2 113 41.6
COL.COLO4_34758 Corchorus olitorius HOM05D003034 ORTHO05D003815 1.6e-07 60.8 257 31.1
Glyma.16G077700 Glycine max HOM05D003034 ORTHO05D003815 1.6e-07 60.8 233 41.2
ATR0705G182 Amborella trichopoda HOM05D003034 ORTHO05D003815 2.7e-07 60.1 241 34.9
Atru.chr3.2836 Acer truncatum HOM05D003034 ORTHO05D003815 3.6e-07 59.7 163 39.9
Cc06_g10290 Coffea canephora HOM05D003034 ORTHO05D003815 4.7e-07 59.3 222 43.2
MD02G1060600 Malus domestica HOM05D003034 ORTHO05D003815 1.4e-06 57.8 146 38.4
HanXRQChr06g0165831 Helianthus annuus HOM05D003034 ORTHO05D003815 1.8e-06 57.4 207 36.2
Os02g0759800 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 4.0e-06 56.2 241 37.3
AagrBONN_evm.TU.Sc2ySwM_344.799 Anthoceros agrestis HOM05D003034 ORTHO05D003815 5.2e-06 55.8 184 39.7
VMungo0464G1299 Vigna mungo HOM05D003034 ORTHO05D003815 5.2e-06 55.8 233 39.9


User provided reference genes

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