Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.2e-238 828.6 425 100.0
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 9.2e-200 700.3 422 81.3
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.7e-199 698.7 425 82.8
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.7e-198 696.0 423 81.8
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.3e-197 691.4 425 80.7
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 5.6e-197 691.0 425 81.4
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.5e-197 690.3 425 80.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.1e-196 689.1 425 81.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.8e-196 688.7 425 80.5
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.8e-196 688.7 425 80.2
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 8.1e-196 687.2 424 81.1
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.4e-195 685.6 425 80.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 8.9e-195 683.7 425 80.5
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 2.6e-194 682.2 425 80.7
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 9.9e-194 680.2 425 80.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 2.9e-193 678.7 425 79.3
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 8.4e-193 677.2 425 80.5
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.1e-192 676.8 426 80.0
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.9e-192 676.0 425 79.5
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.4e-192 674.5 425 79.5
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 3.5e-191 671.8 425 79.3
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 4.6e-191 671.4 425 79.1
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.0e-190 668.7 425 78.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 6.6e-190 667.5 421 79.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 8.7e-190 667.2 425 78.4
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 5.6e-189 664.5 422 78.2
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-188 662.5 425 77.9
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 6.2e-188 661.0 425 77.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.4e-187 659.8 425 77.9
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.0e-187 657.1 432 76.6
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.2e-186 656.8 422 77.3
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 3.4e-186 655.2 425 76.7
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 9.9e-186 653.7 425 77.6
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.9e-185 652.1 425 77.2
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 8.4e-185 650.6 428 77.3
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.4e-184 649.0 422 76.1
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 3.2e-184 648.7 425 77.2
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 3.2e-184 648.7 425 77.9
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 4.2e-184 648.3 426 77.5
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.4e-184 647.9 425 76.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 5.4e-184 647.9 425 76.7
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 1.2e-183 646.7 427 77.8
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.6e-183 646.4 426 76.8
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 2.1e-183 646.0 422 75.8
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 2.7e-183 645.6 425 76.7
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.3e-182 643.3 422 75.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.7e-182 642.9 425 74.4
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 3.0e-182 642.1 425 76.2
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 3.9e-182 641.7 425 76.0
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.9e-182 641.7 425 74.6
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 6.6e-182 641.0 422 78.2
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 8.7e-182 640.6 425 76.2
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 1.5e-181 639.8 425 74.4
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 9.6e-181 637.1 434 76.3
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 1.6e-180 636.3 425 73.4
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 8.1e-180 634.0 426 75.8
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.4e-179 632.5 425 73.2
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.4e-179 632.5 425 75.3
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.2e-178 630.2 427 75.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 5.8e-178 627.9 423 74.2
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.9e-176 622.9 427 74.2
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.2e-175 620.2 424 72.4
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.7e-175 619.0 464 69.0
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.5e-175 618.6 458 71.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 3.0e-174 615.5 427 72.8
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 6.7e-174 614.4 459 69.9
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 8.7e-174 614.0 427 72.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.5e-173 613.2 425 72.0
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 2.5e-173 612.5 423 73.0
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.5e-173 612.5 426 70.7
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 5.6e-173 611.3 424 72.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.6e-173 610.5 429 70.9
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 9.6e-173 610.5 402 75.9
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 2.8e-172 609.0 423 72.1
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.6e-170 602.4 425 70.8
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.3e-169 600.1 425 71.3
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.4e-169 597.4 425 71.5
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.9e-168 596.3 433 71.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 9.3e-168 594.0 427 70.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.5e-165 586.6 425 71.1
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.1e-164 582.8 422 67.8
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.2e-164 581.3 425 71.5
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 5.3e-163 578.2 425 70.6
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 6.9e-163 577.8 423 70.9
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.0e-163 577.4 425 70.4
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 4.5e-162 575.1 426 69.5
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.9e-161 572.4 425 70.4
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.4e-160 570.1 422 66.6
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.9e-160 569.7 426 68.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.6e-159 566.6 426 68.1
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.6e-159 566.6 384 76.0
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.0e-158 563.9 423 67.6
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.3e-158 563.5 426 67.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 3.3e-157 558.9 427 67.4
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 4.3e-157 558.5 427 67.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.3e-157 558.5 426 67.4
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 4.3e-157 558.5 426 67.1
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.7e-157 558.1 425 67.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.1e-155 552.4 324 84.3
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 9.0e-155 550.8 426 66.0
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 7.6e-154 547.7 425 65.2
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.0e-153 547.4 426 66.7
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.3e-153 547.0 426 66.7
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 5.0e-153 545.0 426 66.7
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.1e-152 543.9 426 66.7
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 2.5e-152 542.7 426 66.0
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 7.2e-152 541.2 422 63.0
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.1e-151 539.7 425 64.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 3.6e-151 538.9 425 64.5
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 3.6e-151 538.9 425 64.5
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.0e-150 537.3 425 64.0
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.5e-149 532.7 313 85.3
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 5.7e-149 531.6 426 64.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 7.4e-149 531.2 425 63.8
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 9.7e-149 530.8 425 64.9
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 3.7e-148 528.9 437 64.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 7.7e-146 521.2 381 69.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.8e-145 518.8 426 62.4
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 6.7e-142 508.1 385 67.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 8.2e-140 501.1 444 60.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 1.2e-138 497.3 357 68.1
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.0e-134 484.2 427 57.1
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.0e-130 469.9 424 56.8
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.2e-129 466.5 427 56.2
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 9.4e-128 461.1 388 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 2.9e-121 439.5 451 52.5
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.0e-117 426.8 400 58.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.6e-114 417.2 284 71.5
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.7e-113 413.7 430 50.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.9e-113 412.9 241 86.3
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 7.2e-112 408.3 429 56.6
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.8e-107 393.7 239 83.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 5.4e-107 392.1 324 63.0
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-103 380.6 355 58.9
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 3.4e-101 372.9 356 58.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-73 280.0 214 67.8
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 3.8e-68 263.1 432 37.7
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-67 261.5 325 48.0
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.3e-63 248.1 333 41.1
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 6.4e-60 235.7 175 70.9
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 4.2e-59 233.0 194 64.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.8e-57 227.6 358 43.0
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.8e-54 217.6 252 52.0
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.0e-52 211.8 194 59.3
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 1.2e-50 204.9 305 43.9
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 6.5e-44 182.6 142 62.7
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 6.9e-38 162.5 332 33.1
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 6.9e-38 162.5 193 49.7
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 4.3e-32 143.3 105 71.4
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.4e-30 137.5 126 56.3
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.8e-25 121.3 125 49.6
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.3e-24 117.1 76 73.7
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 4.4e-24 116.7 77 71.4
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 4.4e-24 116.7 77 71.4
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 8.8e-17 92.4 329 23.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.1e-14 85.5 62 66.1
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-13 82.0 62 62.9
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 8.5e-12 75.9 53 77.4
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 1.9e-11 74.7 48 75.0
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 8.0e-10 69.3 75 52.0
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 8.8e-09 65.9 225 27.6
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.5e-08 65.1 225 27.6
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.5e-08 65.1 222 26.1
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.0e-08 64.7 225 28.0
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-08 64.7 133 36.8
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.6e-08 64.3 225 27.1
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.6e-08 64.3 222 26.1
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 3.4e-08 63.9 222 26.1
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 4.4e-08 63.5 222 26.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 4.4e-08 63.5 48 66.7
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.4e-08 63.5 48 66.7
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 4.4e-08 63.5 222 26.1
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 4.4e-08 63.5 47 63.8
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 5.7e-08 63.2 222 26.1
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 5.7e-08 63.2 225 27.6
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 5.7e-08 63.2 222 26.1
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 5.7e-08 63.2 225 27.6
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 5.7e-08 63.2 225 27.6
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 5.7e-08 63.2 222 26.1
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 5.7e-08 63.2 225 27.1
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 7.5e-08 62.8 222 26.1
Dinv09944 Davidia involucrata HOM05D002612 ORTHO05D002859 7.5e-08 62.8 48 66.7
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.3e-07 62.0 49 63.3
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 2.2e-07 61.2 222 25.2
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 2.2e-07 61.2 222 25.2
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 2.2e-07 61.2 222 25.2
SGA_v2.0_scaffold80G25836 Striga asiatica HOM05D002716 ORTHO05D003324 4.8e-07 60.1 210 24.8
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 1.1e-06 58.9 37 67.6


User provided reference genes

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