Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.1e-265 919.5 481 100.0
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 2.0e-190 669.5 488 67.0
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.1e-188 663.7 487 69.6
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 4.5e-187 658.3 484 67.4
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 5.6e-185 651.4 470 68.1
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 8.0e-184 647.5 437 71.6
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.4e-183 646.7 484 68.8
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.5e-182 643.3 488 67.0
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.5e-182 643.3 488 67.0
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 4.9e-181 638.3 523 63.9
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.1e-180 637.1 484 63.4
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 3.2e-180 635.6 488 64.8
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 3.5e-179 632.1 481 67.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.0e-178 628.2 488 62.5
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.5e-177 626.7 488 62.3
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 9.5e-177 624.0 487 64.5
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 9.5e-177 624.0 487 64.7
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.2e-176 623.6 492 61.8
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.6e-176 623.2 492 61.8
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 1.6e-176 623.2 486 64.4
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.1e-175 620.5 481 64.2
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.8e-175 619.8 484 61.8
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.3e-175 619.4 487 65.3
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.8e-175 617.8 492 61.2
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 8.9e-175 617.5 484 62.6
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 3.4e-174 615.5 488 62.5
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 7.5e-174 614.4 484 64.3
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.9e-172 609.8 488 62.7
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 3.2e-172 609.0 485 64.5
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.7e-171 605.9 484 62.8
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 6.0e-171 604.7 483 62.1
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.9e-169 599.7 480 65.8
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.6e-168 596.7 464 63.1
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.6e-168 596.7 471 65.0
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 6.2e-168 594.7 403 71.5
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 6.2e-168 594.7 400 74.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 8.1e-168 594.3 468 64.5
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 2.3e-167 592.8 454 67.0
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 3.1e-167 592.4 486 63.2
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 6.8e-167 591.3 389 75.1
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.2e-166 590.5 389 75.1
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 2.0e-166 589.7 442 67.0
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 2.6e-166 589.3 387 74.9
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.6e-166 589.3 380 73.9
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.4e-166 589.0 486 63.8
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.4e-166 589.0 399 71.2
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 5.8e-166 588.2 456 66.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 7.5e-166 587.8 405 70.9
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.2e-165 586.3 389 74.6
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 4.9e-165 585.1 389 74.3
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.4e-164 583.6 364 74.7
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.4e-164 583.6 492 63.0
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 3.2e-164 582.4 390 74.4
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 4.1e-164 582.0 483 61.7
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 7.1e-164 581.3 489 62.6
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 7.1e-164 581.3 376 73.9
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 1.2e-163 580.5 374 74.1
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.6e-163 580.1 461 63.3
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 6.0e-163 578.2 371 77.4
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 7.8e-163 577.8 448 68.8
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.0e-162 577.4 390 76.2
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.3e-162 577.0 499 60.5
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.7e-162 576.6 400 68.8
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.3e-162 576.2 460 62.0
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.0e-162 575.9 487 61.6
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 3.9e-162 575.5 486 60.7
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.9e-162 575.5 457 63.7
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 3.9e-162 575.5 484 61.2
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 8.6e-162 574.3 484 61.0
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 2.5e-161 572.8 499 59.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 4.7e-160 568.5 489 61.6
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.1e-159 567.4 392 68.4
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 2.4e-159 566.2 487 60.4
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 3.1e-159 565.8 481 60.1
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 4.0e-159 565.5 361 74.5
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 4.0e-159 565.5 487 58.7
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.5e-158 563.5 483 61.5
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 2.0e-158 563.1 447 65.8
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 9.9e-158 560.8 430 65.6
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 9.9e-158 560.8 379 74.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 2.2e-157 559.7 402 67.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 2.2e-157 559.7 471 62.0
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 2.4e-156 556.2 508 58.7
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 7.1e-156 554.7 380 70.5
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 2.7e-155 552.7 389 71.7
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 3.5e-155 552.4 319 79.3
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 7.8e-155 551.2 319 79.0
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 2.3e-154 549.7 566 54.8
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 2.5e-153 546.2 477 59.5
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 3.1e-151 539.3 493 62.5
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 9.0e-151 537.7 370 74.3
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.7e-149 533.5 468 63.7
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.2e-149 533.1 468 63.7
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.2e-147 527.3 365 72.1
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 8.7e-146 521.2 370 67.6
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 3.8e-141 505.8 368 69.0
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.4e-140 503.1 393 65.1
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 4.2e-140 502.3 480 55.2
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 2.1e-139 500.0 262 85.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 3.8e-133 479.2 348 64.1
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.8e-127 460.3 379 59.6
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 1.9e-121 440.3 406 57.6
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-121 440.3 328 62.5
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 6.9e-119 431.8 350 60.6
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.1e-116 424.5 287 69.7
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.6e-110 403.3 277 63.9
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.3e-104 384.4 316 61.4
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 6.5e-93 345.5 235 70.6
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.4e-90 337.8 244 64.8
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 3.1e-87 326.6 364 52.7
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.9e-76 290.8 226 60.2
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.1e-71 275.0 300 46.0
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-70 271.2 204 55.9
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-70 271.2 204 55.9
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.3e-69 267.3 204 55.4
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.9e-69 266.9 263 47.5
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.9e-69 266.9 204 55.4
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.1e-51 207.6 210 51.4
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.6e-33 147.5 98 61.2
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 4.9e-32 143.3 141 59.6
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.8e-18 98.2 161 36.6
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 3.3e-12 77.4 347 22.2
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 5.7e-12 76.6 282 24.8
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 5.7e-12 76.6 280 23.2
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 9.6e-12 75.9 323 22.6
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 274 24.1
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 285 20.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 285 20.7
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.6e-11 75.1 269 23.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.1e-11 74.7 285 20.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 2.8e-11 74.3 270 24.1
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 2.8e-11 74.3 285 20.7
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 4.8e-11 73.6 287 22.0
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 6.3e-11 73.2 272 22.4
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.4e-10 72.0 273 21.6
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 4.1e-10 70.5 363 19.8
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 5.3e-10 70.1 285 20.4
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.4e-09 67.4 322 22.0
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 4.5e-09 67.0 270 21.1
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.0e-08 65.9 274 22.6
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.3e-08 65.5 274 21.5
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 8.4e-08 62.8 134 22.4
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 3.2e-07 60.8 134 21.6


User provided reference genes

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